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Os05g0417500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0353) R2 : 0.713
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.7 (0.089) R2dC : 0.253 R2C : 0.369
β3 : 2.11 (0.11) R2dE : 0.254 R2E : 0.344
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.844 (0.0743) R2dN8 : 0.105 R2N8 : 0.0645
σ : 0.662
deviance : 202.32
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_____
C
peak time of C : 22.2
E
wheather : radiation
threshold : 1.492
memory length : 331
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 10.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.95 0.653 10.8 0.538 1.76 1.94 -0.189 1.86 -0.764 21.9 1.5 319 10.2 --
197.33 0.654 10.8 0.454 1.75 2.01 0.0384 -- -0.784 22 1.49 331 10.4 --
192.93 0.647 10.8 0.558 1.77 1.94 -- 1.91 -0.771 22 1.491 324 10.4 --
197.22 0.654 10.8 0.454 1.73 2.07 -- -- -0.794 22.2 1.5 331 10.5 --
244.98 0.729 10.8 0.625 -- 2.82 -- 1.39 -0.891 -- 1.47 561 10.4 --
245.89 0.735 10.8 0.573 2.71 -- 0.538 -- -0.67 20.1 -- -- -- --
246.76 0.736 10.8 0.557 2.71 -- -- -- -0.67 20.1 -- -- -- --
245.28 0.729 10.7 0.464 -- 2.89 -- -- -0.823 -- 1.49 565 10.6 --
202.32 0.662 10.8 -- 1.7 2.11 -- -- -0.844 22.2 1.492 331 10.5 --
650.09 1.19 10.7 0.533 -- -- -- -- -0.703 -- -- -- -- --
254.95 0.747 10.8 -- 2.71 -- -- -- -0.732 20.1 -- -- -- --
250.99 0.738 10.8 -- -- 2.89 -- -- -0.874 -- 1.42 567 10.6 --
657.58 1.2 10.7 -- -- -- -- -- -0.762 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.10 temperature 10.0 10 > th dose dependent rect. 16 15
2 192.18 radiation 1.0 270 < th dose dependent rect. 16 8
4 192.31 radiation 1.0 270 < th dose independent rect. 16 8
15 193.36 humidity 70.0 270 > th dose independent rect. 17 7
17 193.65 temperature 10.0 90 > th dose dependent rect. 15 6
21 193.82 humidity 50.0 270 > th dose independent rect. 6 18
22 193.83 wind 7.0 270 < th dose independent rect. 14 15
24 193.87 temperature 30.0 270 < th dose independent rect. 17 7
41 195.08 humidity 50.0 270 > th dose dependent rect. 17 7
43 195.22 humidity 50.0 270 > th dose independent rect. 4 23
50 195.62 temperature 10.0 270 > th dose dependent rect. 13 6
52 195.66 radiation 1.0 270 < th dose independent rect. 6 18
54 195.71 temperature 25.0 10 > th dose dependent rect. 16 6
68 196.14 radiation 1.0 270 < th dose dependent rect. 6 18
76 196.39 precipitation 0.1 270 < th dose independent rect. 14 15
77 196.39 precipitation 0.1 270 < th dose dependent rect. 14 15
84 196.54 temperature 25.0 10 > th dose dependent rect. 16 9
91 196.77 temperature 15.0 270 > th dose independent rect. 5 9
96 196.80 radiation 1.0 270 < th dose dependent rect. 5 20
101 196.89 radiation 1.0 270 < th dose dependent sin 16 NA
117 197.10 radiation 1.0 270 > th dose independent sin 16 NA
128 197.39 radiation 1.0 270 < th dose independent sin 16 NA
135 197.66 humidity 90.0 90 < th dose independent rect. 15 6
137 197.67 wind 9.0 270 < th dose independent rect. 24 18
149 197.92 wind 1.0 270 > th dose independent rect. 13 6
153 198.08 temperature 15.0 10 > th dose dependent rect. 16 5
158 198.21 precipitation 0.1 270 < th dose independent rect. 24 18
159 198.21 precipitation 0.1 270 < th dose dependent rect. 24 18
168 198.39 temperature 15.0 270 > th dose dependent rect. 14 4
177 198.55 wind 1.0 270 > th dose independent rect. 11 8
195 198.79 temperature 15.0 270 > th dose dependent rect. 15 2
215 199.07 atmosphere 995.0 270 > th dose independent rect. 5 9
216 199.07 atmosphere 1015.0 270 < th dose independent rect. 5 9
217 199.07 temperature 10.0 270 > th dose independent rect. 14 15
218 199.08 precipitation 0.1 270 < th dose independent rect. 5 9
220 199.08 precipitation 0.1 270 < th dose dependent rect. 5 9
225 199.18 atmosphere 1015.0 270 < th dose independent rect. 24 18
227 199.20 temperature 10.0 270 > th dose independent rect. 18 6
229 199.20 radiation 20.0 270 < th dose independent rect. 18 6
232 199.20 temperature 10.0 270 > th dose independent rect. 24 18
237 199.31 wind 1.0 270 > th dose independent rect. 24 19
239 199.32 humidity 90.0 270 < th dose independent rect. 13 6
243 199.40 atmosphere 995.0 270 > th dose independent rect. 18 6
244 199.40 atmosphere 995.0 270 > th dose independent rect. 24 18
247 199.45 wind 9.0 270 < th dose independent rect. 18 6
261 199.70 radiation 1.0 270 > th dose independent rect. 14 15
262 199.71 radiation 1.0 10 > th dose independent rect. 7 9
263 199.72 radiation 1.0 270 > th dose independent rect. 14 5
264 199.72 wind 7.0 270 < th dose independent rect. 13 6
283 199.91 wind 9.0 270 < th dose independent rect. 5 9
322 200.27 temperature 15.0 90 > th dose independent rect. 7 8
368 200.61 radiation 1.0 90 > th dose independent rect. 7 8
386 200.89 radiation 30.0 90 < th dose independent rect. 15 16
407 201.05 humidity 50.0 270 > th dose dependent rect. 10 14
418 201.22 precipitation 0.1 90 < th dose independent rect. 15 6
419 201.22 precipitation 0.1 90 < th dose dependent rect. 15 6
427 201.29 temperature 10.0 10 > th dose dependent rect. 7 9
438 201.46 temperature 15.0 90 > th dose independent rect. 21 18
450 201.63 wind 9.0 90 < th dose independent rect. 15 6
454 201.67 humidity 90.0 10 < th dose dependent rect. 16 5
459 201.71 temperature 20.0 270 > th dose independent rect. 13 6
462 201.72 humidity 90.0 270 < th dose dependent rect. 15 2
464 201.72 humidity 90.0 90 < th dose dependent rect. 15 6
467 201.75 atmosphere 995.0 270 > th dose independent rect. 14 15
468 201.75 radiation 10.0 10 < th dose independent rect. 24 21
485 201.91 wind 1.0 90 > th dose independent rect. 15 6
494 201.99 wind 1.0 270 > th dose independent rect. 13 15
499 202.05 temperature 15.0 270 > th dose independent rect. 19 18
503 202.08 radiation 40.0 90 < th dose independent rect. 15 6
511 202.13 precipitation 0.1 270 < th dose independent rect. 13 6
513 202.13 precipitation 0.1 270 < th dose dependent rect. 13 6
522 202.23 precipitation 0.1 270 < th dose independent rect. 18 6
524 202.23 precipitation 0.1 270 < th dose dependent rect. 18 6
525 202.25 humidity 70.0 270 < th dose independent rect. 15 2
536 202.35 humidity 70.0 10 > th dose independent rect. 18 9
540 202.38 temperature 10.0 90 > th dose independent rect. 15 6
542 202.38 atmosphere 1010.0 90 < th dose independent rect. 15 6
546 202.42 humidity 50.0 270 > th dose independent rect. 5 9
570 202.52 atmosphere 995.0 90 > th dose independent rect. 15 6
573 202.53 atmosphere 1015.0 90 < th dose independent rect. 7 8
576 202.54 precipitation 0.1 90 < th dose independent rect. 7 8
580 202.54 precipitation 0.1 90 < th dose dependent rect. 7 8
587 202.61 temperature 10.0 270 > th dose independent rect. 13 6
589 202.61 atmosphere 1010.0 270 < th dose independent rect. 13 6
593 202.61 atmosphere 995.0 270 > th dose independent rect. 19 18
594 202.63 atmosphere 995.0 90 > th dose independent rect. 21 18
617 202.83 radiation 1.0 270 > th dose independent rect. 4 10
632 202.87 atmosphere 1000.0 10 > th dose independent rect. 16 15
636 202.91 humidity 50.0 270 > th dose dependent rect. 7 17
638 202.93 wind 7.0 270 < th dose independent rect. 15 2
640 202.93 wind 9.0 90 < th dose independent rect. 21 18
643 202.96 wind 9.0 90 < th dose independent rect. 7 8
645 202.98 atmosphere 995.0 90 > th dose independent rect. 7 8
647 202.99 humidity 90.0 270 < th dose independent rect. 15 2
650 203.00 atmosphere 1015.0 90 < th dose independent rect. 15 16
660 203.08 wind 9.0 270 < th dose independent rect. 19 18
662 203.10 atmosphere 995.0 270 > th dose independent rect. 13 6
691 203.20 humidity 60.0 10 > th dose dependent rect. 18 9
710 203.30 wind 7.0 10 < th dose independent rect. 16 15
724 203.36 precipitation 0.1 10 < th dose independent rect. 16 15
725 203.36 precipitation 0.1 10 < th dose dependent rect. 16 15
728 203.39 humidity 90.0 10 < th dose independent rect. 16 5
730 203.39 temperature 30.0 270 < th dose independent rect. 6 18
742 203.45 precipitation 0.1 30 < th dose independent rect. 3 18
744 203.45 precipitation 0.1 30 < th dose dependent rect. 3 18
750 203.49 radiation 20.0 10 < th dose dependent rect. 24 21
754 203.51 humidity 70.0 270 < th dose independent rect. 13 7
774 203.56 humidity 70.0 270 < th dose independent rect. 14 5
800 203.77 radiation 20.0 30 < th dose independent rect. 12 9
810 203.83 temperature 25.0 270 < th dose independent rect. 24 7
816 203.86 wind 1.0 270 > th dose independent rect. 19 5
846 203.97 temperature 25.0 10 > th dose independent rect. 16 5
869 204.07 radiation 10.0 10 < th dose independent rect. 3 18
874 204.09 humidity 50.0 270 > th dose independent rect. 19 18
887 204.23 atmosphere 1000.0 270 > th dose independent rect. 24 6
891 204.25 radiation 20.0 14400 < th dose dependent rect. 22 3
917 204.40 wind 9.0 270 < th dose independent rect. 22 23
922 204.43 precipitation 0.1 90 < th dose independent rect. 21 18
923 204.43 precipitation 0.1 90 < th dose dependent rect. 21 18
966 204.61 humidity 90.0 10 < th dose dependent rect. 16 15
984 204.79 precipitation 0.1 10 < th dose independent rect. 7 9
985 204.79 precipitation 0.1 10 < th dose dependent rect. 7 9
987 204.79 humidity 80.0 270 < th dose dependent rect. 14 17
989 204.79 radiation 20.0 10 < th dose dependent rect. 3 18
998 204.82 atmosphere 1015.0 10 < th dose independent rect. 16 15
1000 204.84 radiation 30.0 10 < th dose independent rect. 16 15