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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0417400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0508) R2 : 0.0318
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 12.2 (0.694) R2dE : 0.0277 R2E : 0.0306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.118 (0.107) R2dN8 : 0.00113 R2N8 : 0.00409
σ : 0.787
deviance : 283.74
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C
peak time of C : --
E
wheather : temperature
threshold : 20.04
memory length : 94
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.97
open length of G : 1.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.99 0.778 2.92 0.00255 0.271 8.06 -0.329 18.1 -0.123 22.6 20.04 94 6.97 1.95
278.93 0.784 2.91 -0.0731 0.256 12.3 -0.402 -- -0.126 22.6 20.04 94 6.97 1.95
272.44 0.769 2.92 0.0146 0.282 8.02 -- 18.2 -0.119 22.5 20.28 86 6.87 2.07
279.58 0.784 2.91 -0.0576 0.258 12.3 -- -- -0.125 22.8 20.04 94 6.97 1.95
277.25 0.776 2.92 0.0184 -- 7.93 -- 18.3 -0.119 -- 20.27 85 6.88 2.17
427.9 0.97 2.92 0.0149 0.175 -- -0.692 -- -0.149 22.3 -- -- -- --
429.3 0.97 2.91 0.0385 0.198 -- -- -- -0.15 0.278 -- -- -- --
283.67 0.788 2.9 -0.0517 -- 12.2 -- -- -0.124 -- 20.04 94 6.97 1.95
279.67 0.783 2.91 -- 0.257 12.3 -- -- -0.119 22.7 20.04 94 6.97 1.95
431.77 0.971 2.91 0.0451 -- -- -- -- -0.147 -- -- -- -- --
429.34 0.969 2.91 -- 0.199 -- -- -- -0.155 0.288 -- -- -- --
283.74 0.787 2.9 -- -- 12.2 -- -- -0.118 -- 20.04 94 6.97 1.95
431.83 0.97 2.91 -- -- -- -- -- -0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 276.94 temperature 20 90 < th dose dependent rect. 6 3
4 277.12 temperature 20 90 < th dose dependent rect. 8 1
6 277.13 temperature 20 90 < th dose dependent rect. 6 12
13 278.06 temperature 20 90 < th dose independent rect. 7 2
19 278.16 temperature 20 90 < th dose independent rect. 7 11
37 278.87 temperature 20 10 < th dose independent rect. 7 12
38 278.88 wind 5 10 > th dose independent rect. 8 1
40 278.88 wind 5 10 > th dose dependent rect. 8 1
159 302.26 humidity 80 90 < th dose dependent rect. 6 1
161 305.29 wind 3 90 > th dose dependent rect. 6 1
164 311.22 humidity 80 90 < th dose independent rect. 6 1
165 311.23 humidity 80 270 < th dose dependent rect. 4 3
166 311.24 humidity 80 270 < th dose independent rect. 4 3
186 327.33 wind 3 90 > th dose independent rect. 6 1
202 334.86 wind 5 10 > th dose independent rect. 1 8
203 334.97 wind 5 10 > th dose independent rect. 5 4
238 344.93 wind 5 10 > th dose dependent rect. 1 8
239 344.98 wind 5 10 > th dose dependent rect. 5 4
248 346.19 humidity 80 1440 > th dose independent rect. 3 4
255 346.86 humidity 80 1440 > th dose independent rect. 4 1
260 347.44 humidity 80 720 < th dose independent rect. 21 11
291 349.70 humidity 80 720 > th dose independent rect. 23 8
360 355.40 radiation 10 10 < th dose independent rect. 8 1
403 357.14 humidity 80 720 < th dose dependent rect. 21 10
481 361.10 humidity 80 720 < th dose independent sin 10 NA
512 362.58 humidity 80 720 > th dose independent sin 9 NA
644 368.13 humidity 50 720 > th dose dependent rect. 22 7
863 376.11 humidity 80 720 < th dose independent rect. 20 17