FiT-DB / Search/ Help/ Sample detail

Os05g0417200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin-like fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.029) R2 : 0.821
β1 : 1.26 (0.106) R2dD : 0.0568 R2D : 0.0526
β2 : 2.03 (0.0742) R2dC : 0.316 R2C : 0.115
β3 : -2.29 (0.0578) R2dE : 0.657 R2E : 0.452
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.264 (0.0621) R2dN8 : 0.00937 R2N8 : -0.0162
σ : 0.542
deviance : 135.41
__
_____
C
peak time of C : 20.8
E
wheather : temperature
threshold : 29.4
memory length : 239
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.6
open length of G : 14.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.63 0.545 12 1.22 2.1 -2.29 -1.01 0.657 0.293 20.6 29.48 264 16 14.9
135.97 0.543 12 1.22 2.11 -2.26 -0.616 -- 0.279 20.6 29.4 257 16.1 14.8
135.01 0.541 12 1.25 2.05 -2.26 -- 0.399 0.265 20.7 29.5 237 16.6 14.5
135.41 0.542 12 1.26 2.03 -2.29 -- -- 0.264 20.8 29.4 239 16.6 14.4
186.97 0.637 11.9 1.42 -- -3.23 -- 1.76 0.156 -- 47.6 710 15.9 14.2
183.12 0.634 12 1.33 3.18 -- -0.634 -- 0.0992 16.9 -- -- -- --
184.15 0.635 12 1.33 3.18 -- -- -- 0.0961 16.9 -- -- -- --
184.42 0.632 12 1.32 -- -3.28 -- -- 0.0774 -- 61.58 732 15.6 14.4
177.05 0.62 12 -- 1.98 -2.3 -- -- 0.161 20.8 29.1 233 16.6 14.5
717.24 1.25 12 1.21 -- -- -- -- 0.0139 -- -- -- -- --
230.79 0.711 12 -- 3.15 -- -- -- -0.0521 16.9 -- -- -- --
230.6 0.707 12 -- -- -3.19 -- -- -0.0524 -- 72.43 718 15.5 14.9
756.01 1.28 12 -- -- -- -- -- -0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.70 temperature 30.0 270 < th dose independent rect. 16 15
3 137.42 humidity 70.0 270 > th dose independent rect. 16 15
10 141.23 temperature 30.0 270 < th dose independent rect. 2 19
11 141.23 temperature 10.0 90 > th dose dependent rect. 9 19
14 141.98 radiation 20.0 270 < th dose dependent rect. 16 15
23 143.53 temperature 30.0 90 < th dose independent rect. 4 19
25 143.67 temperature 10.0 10 > th dose dependent rect. 9 20
26 143.74 humidity 50.0 270 > th dose independent rect. 2 19
27 143.96 temperature 10.0 270 > th dose dependent rect. 7 19
33 144.63 humidity 50.0 270 > th dose independent rect. 1 21
41 145.01 radiation 10.0 270 < th dose independent rect. 16 15
47 145.68 atmosphere 1005.0 10 > th dose dependent rect. 5 4
53 145.86 temperature 30.0 270 < th dose independent rect. 13 8
62 146.28 atmosphere 1005.0 10 > th dose independent rect. 5 4
82 147.41 atmosphere 1005.0 30 > th dose dependent rect. 3 6
83 147.46 atmosphere 1005.0 270 > th dose dependent rect. 3 3
84 147.52 radiation 1.0 270 < th dose independent rect. 3 18
86 147.60 humidity 70.0 90 > th dose independent rect. 4 19
91 147.87 temperature 30.0 10 < th dose independent rect. 5 18
99 147.97 humidity 50.0 270 > th dose independent rect. 13 9
101 148.02 atmosphere 1005.0 270 > th dose independent rect. 4 2
117 148.53 humidity 80.0 270 > th dose independent rect. 23 2
133 148.87 wind 9.0 270 < th dose independent rect. 7 10
134 148.87 radiation 1.0 43200 < th dose dependent rect. 1 3
141 149.03 humidity 50.0 90 > th dose dependent rect. 4 19
142 149.15 humidity 80.0 90 > th dose independent rect. 23 5
143 149.16 radiation 10.0 270 < th dose dependent rect. 2 20
144 149.22 humidity 50.0 270 > th dose dependent rect. 23 2
146 149.29 radiation 10.0 270 < th dose dependent rect. 3 18
147 149.30 precipitation 0.1 270 < th dose independent rect. 7 10
148 149.30 precipitation 0.1 270 < th dose dependent rect. 7 10
158 149.55 temperature 10.0 270 > th dose dependent rect. 23 2
159 149.57 atmosphere 1015.0 270 < th dose independent rect. 2 20
168 149.65 atmosphere 1015.0 90 < th dose independent rect. 4 19
169 149.69 temperature 10.0 90 > th dose dependent rect. 23 5
172 149.76 atmosphere 995.0 270 > th dose independent rect. 17 14
177 149.87 wind 9.0 270 < th dose dependent rect. 23 2
179 149.90 precipitation 0.1 270 < th dose independent rect. 23 2
180 149.90 precipitation 0.1 270 < th dose dependent rect. 23 2
186 150.05 precipitation 0.1 270 < th dose independent rect. 6 22
187 150.05 precipitation 0.1 270 < th dose dependent rect. 6 22
188 150.07 wind 7.0 270 < th dose independent rect. 23 2
190 150.07 temperature 10.0 270 > th dose independent rect. 23 2
191 150.07 temperature 30.0 270 < th dose independent rect. 23 2
192 150.07 humidity 50.0 270 > th dose independent rect. 23 2
195 150.07 atmosphere 995.0 270 > th dose independent rect. 23 2
196 150.07 radiation 1.0 270 < th dose independent rect. 23 2
201 150.07 temperature 10.0 270 > th dose independent rect. 1 22
202 150.07 radiation 1.0 270 < th dose dependent rect. 23 2
215 150.18 precipitation 0.1 90 < th dose independent rect. 9 19
216 150.18 precipitation 0.1 90 < th dose dependent rect. 9 19
220 150.23 atmosphere 1015.0 270 < th dose independent rect. 1 22
230 150.45 temperature 10.0 270 > th dose independent rect. 7 10
231 150.45 atmosphere 1015.0 270 < th dose independent rect. 7 10
232 150.45 temperature 10.0 270 > th dose independent rect. 17 14
234 150.46 humidity 50.0 90 > th dose dependent rect. 23 5
239 150.53 humidity 50.0 10 > th dose dependent rect. 5 18
240 150.54 humidity 90.0 30 < th dose independent rect. 3 6
244 150.60 humidity 90.0 10 < th dose independent rect. 5 4
246 150.66 radiation 1.0 270 > th dose independent rect. 7 12
259 150.71 humidity 50.0 270 > th dose dependent rect. 13 8
264 150.81 precipitation 0.1 90 < th dose independent rect. 23 5
265 150.81 precipitation 0.1 90 < th dose dependent rect. 23 5
273 150.89 temperature 10.0 10 > th dose dependent rect. 5 4
275 150.93 temperature 15.0 90 > th dose independent rect. 4 19
277 150.96 humidity 50.0 90 > th dose dependent rect. 13 10
278 150.97 radiation 30.0 90 < th dose independent rect. 4 5
282 150.99 wind 9.0 270 < th dose independent rect. 17 14
287 151.07 humidity 50.0 270 > th dose dependent rect. 2 19
290 151.13 wind 9.0 90 < th dose independent rect. 23 5
291 151.13 temperature 10.0 90 > th dose independent rect. 23 5
292 151.13 temperature 30.0 90 < th dose independent rect. 23 5
293 151.13 humidity 50.0 90 > th dose independent rect. 23 5
296 151.13 atmosphere 995.0 90 > th dose independent rect. 23 5
297 151.13 radiation 1.0 90 < th dose independent rect. 23 5
303 151.13 radiation 1.0 90 < th dose dependent rect. 23 5
327 151.32 wind 9.0 90 < th dose dependent rect. 23 5
332 151.37 radiation 1.0 10 < th dose dependent rect. 23 7
336 151.43 wind 1.0 270 > th dose independent rect. 23 2
337 151.43 wind 5.0 90 < th dose independent rect. 4 5
344 151.53 wind 5.0 10 < th dose independent rect. 5 4
346 151.53 wind 7.0 10 < th dose dependent rect. 5 4
365 151.79 wind 9.0 90 < th dose independent rect. 9 19
385 151.86 temperature 10.0 270 > th dose independent rect. 2 20
402 151.93 radiation 1.0 90 > th dose independent rect. 9 10
421 152.01 radiation 1.0 10 < th dose independent rect. 23 7
425 152.03 wind 9.0 10 < th dose independent rect. 9 20
429 152.09 temperature 10.0 10 > th dose dependent rect. 23 6
434 152.12 radiation 1.0 270 < th dose dependent rect. 4 15
436 152.14 temperature 30.0 90 < th dose independent rect. 4 5
439 152.17 humidity 50.0 10 > th dose dependent rect. 23 6
458 152.28 radiation 1.0 30 > th dose independent rect. 5 4
477 152.37 atmosphere 995.0 90 > th dose independent rect. 4 19
479 152.38 humidity 70.0 90 > th dose independent rect. 4 5
487 152.43 radiation 40.0 90 < th dose independent rect. 4 19
494 152.46 precipitation 0.1 90 < th dose independent rect. 4 5
495 152.46 humidity 70.0 90 > th dose independent rect. 13 10
497 152.46 precipitation 0.1 90 < th dose dependent rect. 4 5
498 152.47 wind 7.0 270 < th dose independent rect. 7 20
508 152.52 wind 9.0 10 < th dose independent rect. 23 6
509 152.52 temperature 10.0 10 > th dose independent rect. 23 6
510 152.52 temperature 30.0 10 < th dose independent rect. 23 6
511 152.52 humidity 50.0 10 > th dose independent rect. 23 6
514 152.52 atmosphere 995.0 10 > th dose independent rect. 23 6
520 152.52 temperature 10.0 10 > th dose independent rect. 5 18
522 152.52 atmosphere 1015.0 10 < th dose independent rect. 5 18
525 152.53 precipitation 0.1 10 < th dose independent rect. 5 4
528 152.53 precipitation 0.1 10 < th dose dependent rect. 5 4
537 152.60 temperature 10.0 90 > th dose independent rect. 4 5
540 152.60 atmosphere 995.0 90 > th dose independent rect. 4 5
541 152.60 atmosphere 1015.0 90 < th dose independent rect. 4 5
543 152.60 temperature 10.0 90 > th dose independent rect. 9 19
544 152.60 wind 9.0 270 < th dose independent rect. 6 22
550 152.64 wind 5.0 270 < th dose independent rect. 4 2
558 152.67 temperature 10.0 270 > th dose dependent rect. 4 2
563 152.71 wind 9.0 90 < th dose independent rect. 4 19
567 152.74 temperature 10.0 10 > th dose independent rect. 5 4
569 152.74 temperature 30.0 10 < th dose independent rect. 5 4
570 152.74 humidity 50.0 10 > th dose independent rect. 5 4
572 152.74 atmosphere 995.0 10 > th dose independent rect. 5 4
573 152.74 atmosphere 1015.0 10 < th dose independent rect. 5 4
574 152.74 temperature 10.0 10 > th dose independent rect. 9 20
580 152.77 atmosphere 995.0 270 > th dose independent rect. 2 20
582 152.78 precipitation 0.1 10 < th dose independent rect. 5 18
583 152.78 precipitation 0.1 10 < th dose dependent rect. 5 18
585 152.79 radiation 40.0 10 < th dose independent rect. 5 4
595 152.84 precipitation 0.1 10 < th dose independent rect. 23 6
597 152.84 precipitation 0.1 10 < th dose dependent rect. 23 6
644 152.99 humidity 50.0 270 > th dose dependent rect. 16 15
700 153.29 atmosphere 995.0 10 > th dose independent rect. 5 18
744 153.50 atmosphere 995.0 10 > th dose dependent rect. 5 18
775 153.57 wind 9.0 10 < th dose dependent rect. 23 6
786 153.65 radiation 1.0 270 < th dose independent sin 0 NA
797 153.65 wind 1.0 270 > th dose independent rect. 7 10
835 153.74 radiation 40.0 90 < th dose dependent rect. 4 19
840 153.81 atmosphere 1015.0 270 < th dose independent rect. 11 11
858 153.89 precipitation 0.1 270 < th dose independent rect. 4 2
859 153.89 precipitation 0.1 270 < th dose dependent rect. 4 2
864 153.95 atmosphere 1015.0 270 < th dose independent rect. 17 14
873 153.99 wind 9.0 10 < th dose independent rect. 5 18
880 154.04 atmosphere 1010.0 270 < th dose independent rect. 4 2
886 154.07 radiation 40.0 1440 < th dose dependent rect. 24 5
890 154.11 wind 9.0 270 < th dose independent rect. 1 22
894 154.12 temperature 10.0 270 > th dose independent rect. 4 2
896 154.12 temperature 30.0 270 < th dose independent rect. 4 2
897 154.12 humidity 50.0 270 > th dose independent rect. 4 2
900 154.12 atmosphere 995.0 270 > th dose independent rect. 4 2
902 154.12 radiation 20.0 270 < th dose independent rect. 4 2
905 154.12 temperature 10.0 270 > th dose independent rect. 6 22
910 154.15 wind 9.0 270 < th dose independent rect. 2 20
928 154.28 temperature 30.0 10 < th dose dependent rect. 5 18
935 154.30 radiation 1.0 270 < th dose dependent sin 0 NA
953 154.43 radiation 40.0 270 < th dose dependent rect. 3 4
964 154.44 temperature 10.0 270 > th dose independent rect. 7 20
970 154.46 atmosphere 995.0 270 > th dose dependent rect. 23 2
974 154.48 radiation 40.0 270 < th dose independent rect. 12 10
991 154.54 wind 9.0 270 < th dose dependent rect. 4 2
992 154.56 radiation 40.0 270 < th dose dependent rect. 4 2
999 154.61 temperature 30.0 90 < th dose dependent rect. 4 18