FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0416400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1) (Obtusifoliol 14-alpha demethylase) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0544) R2 : 0.313
β1 : -2.44 (0.2) R2dD : 0.237 R2D : 0.155
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.643 (0.176) R2dE : 0.021 R2E : 0.0117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.2 (0.861) R2dD*E : 0.0797 R2D*E : 0.0383
γ1 : -0.544 (0.118) R2dN8 : 0.0444 R2N8 : 0.0158
σ : 1.01
deviance : 474.38
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 33
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 7.52

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
468.7 1.02 3.54 -2.48 0.288 0.708 -0.727 -6.26 -0.546 3.11 1005 35 15.9 7.31
517.96 1.06 3.54 -2.33 0.16 0.711 -1.06 -- -0.569 0.375 1005 81 16.3 5.63
470.03 1.01 3.54 -2.47 0.275 0.699 -- -6.22 -0.543 3.2 1005 34 16 7.52
520.65 1.06 3.54 -2.23 0.184 0.835 -- -- -0.596 0.646 1005 123 16.2 5.73
474.38 1.01 3.54 -2.44 -- 0.643 -- -6.2 -0.544 -- 1005 33 16 7.52
528.37 1.08 3.57 -2.35 0.244 -- -1.35 -- -0.654 21.9 -- -- -- --
534.39 1.08 3.56 -2.3 0.274 -- -- -- -0.655 23.8 -- -- -- --
523.26 1.07 3.54 -2.24 -- 0.912 -- -- -0.597 -- 1005 144 16.1 5.85
660.81 1.2 3.54 -- 0.196 0.924 -- -- -0.59 0.514 1005 125 16.1 5.82
539.11 1.08 3.56 -2.29 -- -- -- -- -0.651 -- -- -- -- --
673.99 1.21 3.51 -- 0.248 -- -- -- -0.398 23.3 -- -- -- --
656.18 1.19 3.53 -- -- 1.28 -- -- -0.35 -- 1005 181 15.6 5.53
677.84 1.22 3.5 -- -- -- -- -- -0.397 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 474.02 atmosphere 1005 30 < th dose independent rect. 16 7
5 476.15 wind 7 10 > th dose dependent rect. 17 4
8 476.80 wind 7 10 > th dose independent rect. 18 1
11 477.23 wind 7 10 > th dose dependent rect. 17 17
12 477.36 wind 7 10 > th dose dependent rect. 17 12
17 477.37 wind 7 10 > th dose dependent rect. 17 10
24 477.80 wind 7 10 > th dose independent rect. 17 4
30 478.78 atmosphere 1005 270 < th dose independent rect. 17 1
35 479.25 atmosphere 1010 270 < th dose dependent rect. 14 7
126 481.12 atmosphere 1005 90 < th dose independent rect. 10 12
141 482.86 atmosphere 1005 270 < th dose independent rect. 15 4
159 484.61 atmosphere 1010 270 < th dose dependent rect. 11 10
168 485.95 atmosphere 1005 270 > th dose independent rect. 9 13
186 486.54 atmosphere 1010 270 < th dose dependent sin 20 NA
252 487.67 atmosphere 1010 10 < th dose dependent rect. 16 7
328 488.61 wind 9 10 < th dose independent sin 12 NA
333 488.81 atmosphere 1005 720 < th dose independent rect. 10 1
359 489.78 atmosphere 1000 270 > th dose dependent rect. 10 13
384 490.17 atmosphere 995 720 > th dose dependent rect. 9 7
399 490.47 wind 9 10 > th dose independent sin 12 NA
403 490.60 atmosphere 995 270 > th dose dependent sin 19 NA
409 490.76 atmosphere 1005 90 < th dose independent sin 19 NA
451 491.31 humidity 70 14400 > th dose dependent rect. 3 3
550 492.70 atmosphere 1005 90 > th dose independent sin 19 NA
594 493.39 atmosphere 1010 720 < th dose dependent rect. 10 3
649 494.05 wind 3 720 < th dose independent rect. 9 1
673 494.35 atmosphere 1005 720 > th dose independent rect. 8 8
675 494.40 atmosphere 1005 720 > th dose independent rect. 8 6
754 495.25 atmosphere 1010 720 < th dose dependent rect. 10 1
779 495.48 atmosphere 1005 720 > th dose independent rect. 9 2
824 495.89 wind 5 720 < th dose dependent rect. 9 1
832 495.98 humidity 90 14400 < th dose independent rect. 4 2