Os05g0415400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsNAC6 protein.
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Os05g0415400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to OsNAC6 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.98 | 0.385 | 3.07 | -0.941 | 0.041 | 1.22 | 0.394 | -11.7 | -0.0831 | 16.5 | 30.2 | 761 | -- | -- |
| 70.61 | 0.391 | 2.95 | 0.182 | 0.0268 | -0.0839 | 0.344 | -- | -0.0884 | 16.7 | 29.7 | 2481 | -- | -- |
| 67.39 | 0.382 | 3.07 | -0.928 | 0.0402 | 1.23 | -- | -11.6 | -0.0795 | 16.7 | 30.21 | 761 | -- | -- |
| 70.87 | 0.392 | 2.95 | 0.189 | 0.0326 | -0.103 | -- | -- | -0.0868 | 17.5 | 29.55 | 3794 | -- | -- |
| 67.48 | 0.383 | 3.07 | -0.937 | -- | 1.24 | -- | -11.6 | -0.0794 | -- | 30.2 | 761 | -- | -- |
| 70.84 | 0.395 | 2.94 | 0.158 | 0.0309 | -- | 0.359 | -- | -0.0759 | 15.6 | -- | -- | -- | -- |
| 71.22 | 0.395 | 2.94 | 0.164 | 0.0347 | -- | -- | -- | -0.0738 | 16.6 | -- | -- | -- | -- |
| 70.89 | 0.392 | 2.94 | 0.188 | -- | -0.0957 | -- | -- | -0.0817 | -- | 30.04 | 6103 | -- | -- |
| 71.71 | 0.394 | 2.95 | -- | 0.0283 | -0.0836 | -- | -- | -0.0981 | 18.1 | 27.2 | 3820 | -- | -- |
| 71.29 | 0.395 | 2.94 | 0.163 | -- | -- | -- | -- | -0.0747 | -- | -- | -- | -- | -- |
| 71.93 | 0.397 | 2.95 | -- | 0.0317 | -- | -- | -- | -0.0921 | 16.7 | -- | -- | -- | -- |
| 71.74 | 0.394 | 2.94 | -- | -- | -0.0732 | -- | -- | -0.0769 | -- | 29.87 | 11140 | -- | -- |
| 71.99 | 0.396 | 2.95 | -- | -- | -- | -- | -- | -0.0928 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 61.41 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 1 |
| 5 | 63.75 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 1 |
| 37 | 64.27 | humidity | 50 | 720 | < th | dose independent | rect. | 13 | 1 |
| 39 | 64.71 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 43 | 65.40 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 1 |
| 46 | 65.68 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 2 |
| 48 | 65.68 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 55 | 65.87 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 21 |
| 63 | 66.16 | temperature | 30 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 83 | 66.37 | humidity | 50 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 84 | 66.39 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 86 | 66.39 | humidity | 50 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 92 | 66.43 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 104 | 66.55 | wind | 3 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 130 | 66.68 | humidity | 50 | 10 | < th | dose dependent | rect. | 15 | 3 |
| 148 | 66.69 | humidity | 50 | 90 | < th | dose independent | rect. | 14 | 2 |
| 151 | 66.70 | temperature | 30 | 720 | > th | dose dependent | sin | 13 | NA |
| 154 | 66.71 | humidity | 50 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 178 | 66.73 | temperature | 30 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 218 | 66.76 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 278 | 66.78 | humidity | 50 | 90 | < th | dose dependent | sin | 12 | NA |
| 381 | 66.84 | humidity | 50 | 90 | < th | dose independent | sin | 12 | NA |
| 382 | 66.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 386 | 66.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 389 | 66.85 | temperature | 30 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 409 | 66.91 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 451 | 66.96 | humidity | 50 | 90 | > th | dose independent | sin | 12 | NA |
| 452 | 66.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 489 | 67.09 | temperature | 30 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 569 | 67.22 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 719 | 67.31 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 13 | 1 |
| 731 | 67.33 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 3 |
| 778 | 67.36 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 2 |
| 812 | 67.43 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |
| 823 | 67.46 | temperature | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 828 | 67.49 | radiation | 20 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 878 | 67.53 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 17 | 18 |
| 881 | 67.54 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 902 | 67.58 | wind | 9 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 903 | 67.58 | temperature | 10 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 906 | 67.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 910 | 67.58 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 920 | 67.58 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 921 | 67.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 941 | 67.58 | temperature | 10 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 944 | 67.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 945 | 67.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 964 | 67.61 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 1 |
| 975 | 67.63 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 983 | 67.64 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 23 | 12 |
| 1000 | 67.67 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 17 | 17 |