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Os05g0414300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.35 (0.0165) R2 : 0.515
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.942 (0.0428) R2dC : 0.516 R2C : 0.514
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0284 (0.0348) R2dN8 : 0.000917 R2N8 : -0.00123
σ : 0.312
deviance : 44.53
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_____
C
peak time of C : 4.64
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.5 0.268 8.28 0.842 0.942 0.358 -0.468 -1.28 0.178 4.67 1010 9038 -- --
37.55 0.285 8.3 0.694 0.953 0.519 -0.446 -- 0.175 4.65 1010 41614 -- --
33.06 0.268 8.28 0.842 0.939 0.363 -- -1.25 0.181 4.66 1010 9187 -- --
37.92 0.287 8.31 0.662 0.938 0.498 -- -- 0.142 4.6 1010 41117 -- --
79.65 0.416 8.28 0.88 -- 0.286 -- -1.31 0.214 -- 1010 9174 -- --
41.45 0.302 8.34 0.308 0.939 -- -0.449 -- 0.00386 4.65 -- -- -- --
41.99 0.303 8.34 0.311 0.936 -- -- -- 0.00618 4.65 -- -- -- --
85.13 0.43 8.32 0.638 -- 0.476 -- -- 0.153 -- 1010 37866 -- --
41.5 0.3 8.33 -- 0.953 0.275 -- -- 0.0265 4.62 1010 8540 -- --
88.56 0.44 8.35 0.347 -- -- -- -- 0.0307 -- -- -- -- --
44.53 0.312 8.35 -- 0.942 -- -- -- -0.0284 4.64 -- -- -- --
89.57 0.441 8.34 -- -- 0.228 -- -- 0.0484 -- 1011 8693 -- --
91.73 0.447 8.35 -- -- -- -- -- -0.00778 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.91 temperature 15.0 14400 > th dose independent rect. 9 4
3 33.02 temperature 15.0 14400 < th dose independent rect. 9 4
9 33.12 temperature 15.0 14400 < th dose dependent rect. 3 9
11 33.13 temperature 15.0 14400 < th dose dependent rect. 3 7
15 33.14 temperature 15.0 14400 < th dose dependent sin 5 NA
22 33.15 temperature 15.0 14400 < th dose dependent rect. 4 4
31 33.16 temperature 15.0 14400 < th dose dependent rect. 21 15
44 33.17 temperature 15.0 14400 < th dose dependent rect. 23 14
82 33.19 temperature 15.0 14400 < th dose dependent rect. 23 1
118 33.21 temperature 15.0 14400 > th dose independent rect. 10 1
159 33.24 temperature 15.0 14400 < th dose independent rect. 11 2
168 33.24 temperature 15.0 14400 < th dose dependent rect. 8 22
178 33.25 temperature 15.0 14400 < th dose dependent no NA NA
197 33.26 temperature 15.0 14400 < th dose dependent rect. 5 1
201 33.26 temperature 15.0 14400 < th dose dependent rect. 20 6
252 33.28 temperature 15.0 14400 < th dose dependent rect. 1 23
264 33.29 temperature 15.0 14400 < th dose dependent rect. 3 23
320 33.37 humidity 50.0 43200 < th dose dependent rect. 18 1
371 33.52 temperature 15.0 14400 < th dose dependent rect. 1 1
372 33.52 temperature 15.0 14400 < th dose dependent rect. 10 1
393 33.58 humidity 50.0 43200 < th dose independent rect. 18 2
404 33.64 radiation 1.0 720 < th dose dependent rect. 13 18
408 33.65 temperature 30.0 30 < th dose dependent rect. 13 19
412 33.67 radiation 1.0 720 < th dose dependent rect. 11 20
429 33.82 temperature 30.0 270 < th dose dependent rect. 11 19
436 33.85 radiation 1.0 720 < th dose dependent sin 14 NA
437 33.85 temperature 10.0 270 > th dose dependent rect. 6 19
448 33.90 radiation 1.0 14400 < th dose dependent rect. 9 1
450 33.91 temperature 15.0 14400 > th dose independent rect. 22 1
451 33.91 temperature 15.0 10 > th dose dependent rect. 8 18
455 33.94 temperature 15.0 14400 < th dose independent rect. 22 1
463 33.96 temperature 10.0 270 > th dose dependent rect. 7 17
487 34.07 humidity 50.0 43200 < th dose dependent rect. 17 3
496 34.11 humidity 50.0 43200 < th dose dependent rect. 17 14
498 34.12 radiation 1.0 720 < th dose dependent rect. 5 16
517 34.18 humidity 50.0 43200 > th dose independent rect. 18 2
543 34.28 wind 7.0 14400 > th dose independent rect. 5 1
544 34.28 wind 7.0 14400 < th dose independent rect. 5 1
552 34.30 temperature 25.0 90 > th dose independent rect. 7 21
561 34.32 temperature 25.0 30 > th dose independent rect. 8 17
565 34.32 temperature 20.0 10 > th dose dependent rect. 7 22
575 34.33 temperature 30.0 90 < th dose dependent rect. 12 23
590 34.39 precipitation 0.1 14400 > th dose dependent rect. 5 2
594 34.40 precipitation 0.1 14400 > th dose independent rect. 5 2
607 34.42 radiation 1.0 720 < th dose dependent rect. 13 8
614 34.44 atmosphere 1010.0 14400 < th dose independent rect. 21 2
616 34.45 atmosphere 1010.0 14400 > th dose independent rect. 21 1
624 34.46 radiation 1.0 720 < th dose dependent rect. 11 10
628 34.47 radiation 1.0 720 < th dose dependent sin 23 NA
646 34.49 radiation 1.0 720 < th dose dependent rect. 2 23
654 34.51 wind 5.0 14400 > th dose dependent rect. 11 1
656 34.52 precipitation 0.1 14400 < th dose independent rect. 5 2
657 34.52 radiation 1.0 720 < th dose dependent no NA NA
658 34.52 precipitation 0.1 14400 < th dose dependent rect. 5 2
674 34.55 radiation 1.0 720 < th dose dependent rect. 4 23
689 34.58 wind 3.0 43200 > th dose dependent rect. 14 1
703 34.60 wind 5.0 43200 > th dose independent rect. 14 1
731 34.64 radiation 1.0 720 < th dose dependent rect. 22 23
732 34.65 precipitation 0.1 43200 > th dose independent rect. 23 1
737 34.65 precipitation 0.1 43200 > th dose dependent rect. 23 1
740 34.65 temperature 30.0 90 < th dose dependent rect. 1 22
757 34.68 radiation 1.0 720 > th dose independent sin 15 NA
759 34.68 precipitation 0.1 43200 < th dose independent rect. 23 1
760 34.68 temperature 25.0 720 > th dose independent rect. 7 12
761 34.68 precipitation 0.1 43200 < th dose dependent rect. 23 1
766 34.69 radiation 1.0 14400 > th dose independent rect. 8 2
770 34.70 wind 5.0 43200 < th dose independent rect. 14 1
797 34.73 temperature 25.0 720 > th dose independent rect. 7 15
804 34.74 radiation 20.0 14400 < th dose independent rect. 17 14
809 34.74 radiation 1.0 720 < th dose dependent rect. 17 23
812 34.75 radiation 1.0 14400 < th dose independent rect. 8 2
815 34.75 radiation 40.0 4320 < th dose dependent rect. 22 7
824 34.76 radiation 20.0 14400 < th dose independent rect. 22 8
852 34.81 radiation 1.0 720 < th dose independent sin 16 NA
865 34.82 temperature 25.0 1440 < th dose independent rect. 17 1
871 34.82 wind 5.0 14400 > th dose dependent rect. 5 1
881 34.83 wind 7.0 14400 < th dose independent rect. 11 1
909 34.85 radiation 20.0 14400 < th dose independent rect. 24 7
914 34.85 humidity 50.0 43200 < th dose independent rect. 18 12
925 34.86 wind 9.0 43200 < th dose dependent rect. 14 1
938 34.88 wind 7.0 14400 > th dose independent rect. 11 1
953 34.89 radiation 20.0 14400 < th dose independent rect. 2 5
962 34.90 radiation 20.0 14400 < th dose independent rect. 6 1
964 34.90 radiation 20.0 14400 < th dose independent rect. 17 3
967 34.90 radiation 1.0 720 < th dose independent rect. 13 8
972 34.90 radiation 1.0 720 < th dose independent rect. 11 10
990 34.92 atmosphere 1005.0 43200 > th dose independent rect. 14 1