Os05g0414200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0414200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.59 | 0.381 | 9.2 | 1.42 | 0.71 | -0.64 | 0.261 | 0.952 | 0.878 | 0.451 | 10.05 | 1429 | -- | -- |
| 67.23 | 0.382 | 9.2 | 1.42 | 0.728 | -0.689 | 0.477 | -- | 0.879 | 0.335 | 10.04 | 1371 | -- | -- |
| 64.97 | 0.375 | 9.19 | 1.42 | 0.718 | -0.627 | -- | 1.21 | 0.864 | 0.301 | 10.05 | 1346 | -- | -- |
| 67.4 | 0.382 | 9.2 | 1.39 | 0.762 | -0.623 | -- | -- | 0.846 | 0.411 | 10.05 | 1356 | -- | -- |
| 80.65 | 0.421 | 9.24 | 1.08 | -- | -0.487 | -- | -0.0677 | 0.671 | -- | 2.489 | 1651 | -- | -- |
| 77.93 | 0.414 | 9.26 | 1.07 | 0.683 | -- | 0.186 | -- | 0.634 | 0.433 | -- | -- | -- | -- |
| 78.07 | 0.414 | 9.26 | 1.07 | 0.682 | -- | -- | -- | 0.633 | 0.468 | -- | -- | -- | -- |
| 80.17 | 0.419 | 9.24 | 1.07 | -- | -0.495 | -- | -- | 0.685 | -- | 3.71 | 1683 | -- | -- |
| 104 | 0.475 | 9.25 | -- | 0.69 | -0.246 | -- | -- | 0.628 | 0.57 | 29.92 | 1323 | -- | -- |
| 107.3 | 0.484 | 9.25 | 1.09 | -- | -- | -- | -- | 0.645 | -- | -- | -- | -- | -- |
| 108.05 | 0.486 | 9.29 | -- | 0.698 | -- | -- | -- | 0.514 | 0.545 | -- | -- | -- | -- |
| 110.31 | 0.491 | 9.27 | -- | -- | -0.506 | -- | -- | 0.567 | -- | 3.71 | 1683 | -- | -- |
| 138.64 | 0.55 | 9.28 | -- | -- | -- | -- | -- | 0.524 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.66 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 4 | 62.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 7 | 63.20 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 23 | 63.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 112 | 64.35 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 155 | 64.53 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 171 | 64.59 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 240 | 65.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 244 | 65.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 289 | 65.55 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 290 | 65.57 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 333 | 65.67 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 422 | 65.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 466 | 65.95 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 476 | 65.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 479 | 66.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 499 | 66.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 502 | 66.07 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 506 | 66.12 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 507 | 66.13 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 511 | 66.16 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 514 | 66.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 558 | 66.40 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 564 | 66.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 567 | 66.47 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 623 | 66.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 679 | 66.71 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 687 | 66.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 689 | 66.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 693 | 66.75 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 771 | 66.85 | humidity | 90 | 720 | < th | dose dependent | sin | 18 | NA |
| 821 | 66.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 833 | 66.94 | wind | 1 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 870 | 66.99 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 877 | 67.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 959 | 67.13 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 1 |