Os05g0412300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os05g0412300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.19 | 0.323 | 8.29 | 0.0579 | 0.509 | 0.499 | 0.034 | -0.00149 | -0.403 | 21.9 | 21.2 | 686 | -- | -- |
| 47.15 | 0.32 | 8.29 | 0.0627 | 0.507 | 0.494 | 0.0254 | -- | -0.405 | 21.9 | 21.32 | 688 | -- | -- |
| 47.15 | 0.32 | 8.29 | 0.0632 | 0.51 | 0.495 | -- | -0.00462 | -0.404 | 21.9 | 21.3 | 688 | -- | -- |
| 47.15 | 0.32 | 8.29 | 0.0615 | 0.508 | 0.493 | -- | -- | -0.405 | 22 | 21.33 | 685 | -- | -- |
| 61.66 | 0.366 | 8.29 | 0.0756 | -- | 0.585 | -- | 0.0437 | -0.446 | -- | 21.8 | 778 | -- | -- |
| 55.85 | 0.35 | 8.27 | 0.237 | 0.598 | -- | 0.00302 | -- | -0.269 | 21.8 | -- | -- | -- | -- |
| 55.85 | 0.35 | 8.27 | 0.237 | 0.598 | -- | -- | -- | -0.269 | 21.8 | -- | -- | -- | -- |
| 61.57 | 0.365 | 8.29 | 0.027 | -- | 0.607 | -- | -- | -0.456 | -- | 21.8 | 746 | -- | -- |
| 47.24 | 0.32 | 8.3 | -- | 0.505 | 0.508 | -- | -- | -0.415 | 22 | 21.37 | 688 | -- | -- |
| 77.24 | 0.411 | 8.25 | 0.243 | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
| 57.33 | 0.354 | 8.27 | -- | 0.599 | -- | -- | -- | -0.295 | 21.9 | -- | -- | -- | -- |
| 61.58 | 0.365 | 8.29 | -- | -- | 0.614 | -- | -- | -0.462 | -- | 21.84 | 758 | -- | -- |
| 78.8 | 0.414 | 8.26 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 3 | 42.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 14 | 42.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 15 | 42.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 47 | 43.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 96 | 43.86 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 136 | 44.17 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 163 | 44.36 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 215 | 44.69 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 248 | 44.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 341 | 45.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 385 | 45.64 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 426 | 45.83 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 472 | 46.00 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 473 | 46.00 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 477 | 46.02 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 1 |
| 485 | 46.04 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 3 |
| 539 | 46.24 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 571 | 46.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 591 | 46.41 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 11 |
| 598 | 46.42 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 608 | 46.47 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 684 | 46.69 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 685 | 46.70 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 706 | 46.77 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 713 | 46.79 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 839 | 47.07 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 10 |
| 886 | 47.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 923 | 47.27 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 991 | 47.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 21 |