Os05g0410900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os05g0410900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.62 | 0.357 | 10.1 | -0.0511 | 1.37 | 0.26 | 1.12 | 5.21 | -0.00201 | 8.32 | 30.05 | 795 | -- | -- |
| 59.51 | 0.359 | 10.1 | -0.585 | 1.39 | 0.766 | 1.08 | -- | -0.027 | 8.3 | 30.6 | 748 | -- | -- |
| 61.05 | 0.364 | 10.1 | -0.017 | 1.35 | 0.197 | -- | 5.14 | -0.0173 | 8.28 | 30.4 | 833 | -- | -- |
| 61.77 | 0.366 | 10.1 | -0.627 | 1.36 | 0.768 | -- | -- | -0.022 | 8.24 | 30.56 | 800 | -- | -- |
| 140.56 | 0.552 | 10 | 0.463 | -- | -0.199 | -- | 5.53 | -0.00494 | -- | 31 | 1426 | -- | -- |
| 76.11 | 0.409 | 10.1 | -0.511 | 1.18 | -- | 0.597 | -- | -0.118 | 8.33 | -- | -- | -- | -- |
| 77.2 | 0.411 | 10.1 | -0.494 | 1.18 | -- | -- | -- | -0.119 | 8.27 | -- | -- | -- | -- |
| 137.91 | 0.547 | 10.2 | -0.617 | -- | 0.446 | -- | -- | -0.0746 | -- | 32.25 | 5766 | -- | -- |
| 71.86 | 0.395 | 10.1 | -- | 1.34 | 0.677 | -- | -- | 0.0172 | 8.22 | 30.8 | 772 | -- | -- |
| 154.59 | 0.581 | 10.2 | -0.485 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 83.62 | 0.428 | 10.1 | -- | 1.18 | -- | -- | -- | -0.0639 | 8.3 | -- | -- | -- | -- |
| 147.46 | 0.566 | 10.1 | -- | -- | 0.499 | -- | -- | 0.025 | -- | 32.1 | 5793 | -- | -- |
| 160.81 | 0.592 | 10.2 | -- | -- | -- | -- | -- | -0.0519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.10 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 3 |
| 3 | 56.53 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 5 |
| 4 | 56.53 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 14 |
| 7 | 56.96 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 8 |
| 14 | 57.20 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 6 |
| 34 | 57.35 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 20 |
| 67 | 57.53 | temperature | 30 | 720 | > th | dose independent | sin | 19 | NA |
| 71 | 57.56 | temperature | 30 | 720 | < th | dose independent | sin | 21 | NA |
| 73 | 57.57 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 11 |
| 74 | 57.57 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 16 |
| 87 | 57.70 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 23 |
| 89 | 57.71 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 21 |
| 91 | 57.73 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 93 | 57.74 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 2 |
| 99 | 57.76 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 12 |
| 109 | 57.81 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 16 |
| 146 | 58.01 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 23 |
| 152 | 58.06 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 245 | 58.07 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 272 | 58.15 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 21 |
| 276 | 58.18 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 296 | 58.24 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 324 | 58.45 | temperature | 30 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 353 | 58.67 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 23 |
| 373 | 58.69 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 379 | 58.72 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 419 | 58.79 | temperature | 30 | 720 | > th | dose dependent | sin | 21 | NA |
| 433 | 58.83 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 507 | 58.92 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 631 | 59.01 | temperature | 30 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 643 | 59.14 | temperature | 30 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 745 | 59.68 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 746 | 59.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 794 | 59.92 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 797 | 59.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 909 | 60.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 931 | 60.31 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 932 | 60.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 950 | 60.38 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 958 | 60.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 983 | 60.45 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |