FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0410500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.8 (0.052) R2 : 0.181
β1 : -0.0678 (0.195) R2dD : 0.000386 R2D : -0.00862
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.06 (0.133) R2dE : 0.123 R2E : 0.0935
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.96 (0.493) R2dD*E : 0.0724 R2D*E : 0.0295
γ1 : -0.316 (0.111) R2dN8 : 0.0195 R2N8 : 0.0162
σ : 0.956
deviance : 421.68
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.9
memory length : 325
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.25
open length of G : 19.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.74 0.939 3.84 -0.235 0.509 -0.757 -1.73 -3.4 -0.4 1.75 19.9 301 4.89 19
430.63 0.966 3.82 -0.235 0.642 -0.665 -0.481 -- -0.397 1.84 14.11 174 6.01 19.2
406.69 0.939 3.85 -0.171 0.582 -0.799 -- -3.18 -0.388 1.27 19.4 349 4.62 19.6
426.61 0.968 3.77 -0.131 0.667 -0.685 -- -- -0.285 2.4 13.94 50 6.35 21.1
421.68 0.956 3.8 -0.0678 -- -1.06 -- -2.96 -0.316 -- 19.9 325 4.25 19.3
443.84 0.988 3.78 -0.0844 1.05 -- 0.397 -- -0.358 3.56 -- -- -- --
444.26 0.987 3.78 -0.0912 1.05 -- -- -- -0.36 3.43 -- -- -- --
446.45 0.984 3.77 -0.129 -- -1.04 -- -- -0.267 -- 12.84 53 6.26 21
426.17 0.961 3.77 -- 0.68 -0.734 -- -- -0.288 2.38 13.32 43 6.22 21.3
506.23 1.05 3.78 -0.0469 -- -- -- -- -0.332 -- -- -- -- --
444.47 0.986 3.78 -- 1.05 -- -- -- -0.35 3.43 -- -- -- --
446.89 0.985 3.76 -- -- -1.04 -- -- -0.254 -- 12.92 55 6.23 21
506.28 1.05 3.78 -- -- -- -- -- -0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.44 temperature 20.0 270 > th dose independent rect. 5 19
10 405.08 temperature 20.0 270 > th dose independent rect. 19 5
13 405.64 temperature 15.0 10 > th dose dependent rect. 23 3
17 406.09 temperature 15.0 270 > th dose dependent rect. 19 6
23 407.32 wind 3.0 270 < th dose dependent rect. 1 6
53 408.72 temperature 20.0 270 > th dose independent rect. 21 2
61 409.19 wind 1.0 270 < th dose independent rect. 4 1
67 409.50 atmosphere 995.0 270 > th dose independent rect. 6 18
81 410.07 humidity 90.0 10 > th dose independent rect. 7 18
83 410.17 wind 1.0 270 < th dose independent rect. 1 4
85 410.23 wind 5.0 270 < th dose independent rect. 16 9
91 410.44 wind 7.0 270 < th dose independent rect. 6 18
100 410.72 wind 1.0 270 < th dose independent rect. 1 7
102 410.76 temperature 25.0 270 < th dose independent rect. 24 7
116 411.03 temperature 30.0 270 < th dose dependent rect. 24 7
125 411.31 humidity 80.0 90 > th dose independent rect. 19 8
148 411.77 radiation 30.0 30 < th dose independent rect. 24 11
155 411.89 wind 3.0 30 < th dose independent rect. 2 6
163 411.95 wind 9.0 270 < th dose dependent rect. 16 8
237 412.90 atmosphere 995.0 270 > th dose dependent rect. 24 6
239 412.92 precipitation 0.1 270 < th dose independent rect. 24 6
240 412.92 precipitation 0.1 270 < th dose dependent rect. 24 6
249 413.03 temperature 25.0 90 < th dose independent rect. 1 9
250 413.04 temperature 15.0 90 > th dose independent rect. 13 17
263 413.21 humidity 70.0 90 > th dose dependent rect. 6 21
278 413.34 humidity 50.0 270 > th dose dependent rect. 24 6
282 413.37 humidity 70.0 90 > th dose dependent rect. 18 9
290 413.41 radiation 10.0 270 < th dose independent rect. 24 7
292 413.42 atmosphere 1015.0 270 < th dose independent rect. 24 6
293 413.42 temperature 10.0 90 > th dose dependent rect. 9 16
294 413.43 temperature 10.0 270 > th dose independent rect. 24 6
296 413.43 humidity 50.0 270 > th dose independent rect. 24 6
299 413.43 atmosphere 995.0 270 > th dose independent rect. 24 6
306 413.44 wind 9.0 270 < th dose independent rect. 24 6
324 413.55 atmosphere 1010.0 30 < th dose independent rect. 13 17
325 413.55 temperature 15.0 10 > th dose independent rect. 8 18
326 413.55 radiation 40.0 270 < th dose dependent rect. 24 6
334 413.61 temperature 15.0 10 > th dose dependent rect. 20 6
347 413.75 humidity 50.0 270 > th dose dependent rect. 18 7
349 413.77 humidity 70.0 10 > th dose dependent rect. 18 9
355 413.84 atmosphere 1000.0 270 > th dose independent rect. 5 9
357 413.84 temperature 10.0 10 > th dose dependent rect. 8 18
359 413.86 atmosphere 1000.0 90 < th dose dependent rect. 13 1
360 413.87 atmosphere 1015.0 1440 < th dose independent rect. 1 8
365 413.90 radiation 40.0 30 < th dose dependent rect. 24 11
387 413.96 wind 1.0 90 > th dose independent rect. 6 7
410 414.10 temperature 15.0 90 > th dose independent rect. 23 2
429 414.29 atmosphere 1000.0 90 < th dose independent rect. 12 1
430 414.29 humidity 90.0 30 > th dose independent rect. 19 6
433 414.29 wind 3.0 30 < th dose dependent rect. 24 11
444 414.34 humidity 70.0 10 > th dose dependent rect. 6 21
457 414.41 humidity 80.0 90 > th dose independent rect. 21 6
461 414.42 atmosphere 995.0 270 > th dose independent rect. 16 9
468 414.46 temperature 30.0 30 < th dose independent rect. 24 11
485 414.53 wind 7.0 30 < th dose dependent rect. 24 11
508 414.57 temperature 15.0 10 > th dose independent rect. 23 3
534 414.74 wind 9.0 270 < th dose dependent rect. 7 17
538 414.77 humidity 90.0 10 > th dose dependent rect. 7 18
548 414.82 atmosphere 1015.0 1440 < th dose independent rect. 1 6
551 414.83 wind 7.0 270 < th dose independent rect. 4 23
556 414.87 temperature 25.0 90 < th dose independent rect. 3 7
566 414.93 precipitation 0.1 270 < th dose independent rect. 6 18
569 414.93 precipitation 0.1 270 < th dose dependent rect. 6 18
578 414.96 radiation 1.0 270 < th dose dependent rect. 1 16
634 415.21 radiation 20.0 90 < th dose independent rect. 3 7
637 415.23 temperature 15.0 10 > th dose dependent rect. 23 7
668 415.32 temperature 10.0 270 > th dose dependent rect. 6 18
691 415.40 atmosphere 995.0 30 > th dose dependent rect. 24 8
704 415.47 temperature 15.0 1440 > th dose independent rect. 12 13
712 415.50 humidity 80.0 90 > th dose independent rect. 6 21
721 415.52 atmosphere 1000.0 10 < th dose dependent rect. 13 6
736 415.59 humidity 70.0 90 > th dose dependent rect. 7 17
740 415.62 radiation 1.0 270 < th dose dependent sin 3 NA
794 415.73 humidity 90.0 270 > th dose dependent rect. 1 5
795 415.74 radiation 10.0 4320 < th dose dependent rect. 7 2
858 416.01 temperature 25.0 270 < th dose independent rect. 3 1
859 416.01 radiation 1.0 270 < th dose independent rect. 1 15
867 416.04 radiation 40.0 270 < th dose independent rect. 7 17
870 416.05 atmosphere 995.0 10 > th dose independent rect. 8 18
872 416.05 radiation 40.0 90 < th dose dependent rect. 3 7
936 416.23 humidity 90.0 270 > th dose dependent rect. 3 2
998 416.34 humidity 80.0 90 > th dose independent rect. 9 18