FiT-DB / Search/ Help/ Sample detail

Os05g0409800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.17 (0.0363) R2 : 0.651
β1 : 0.946 (0.138) R2dD : 0.0198 R2D : 0.0511
β2 : 2.5 (0.0917) R2dC : 0.541 R2C : 0.592
β3 : 1.49 (0.115) R2dE : -0.00598 R2E : 0.0588
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.267 (0.0799) R2dN8 : 0.0161 R2N8 : 0.00221
σ : 0.562
deviance : 143.69
__
_____
C
peak time of C : 20
E
wheather : temperature
threshold : 22.75
memory length : 2471
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.18 0.552 6.02 2.08 2.64 0.982 0.654 5.26 0.077 19.2 11.41 1654 -- --
159.45 0.593 6.17 0.975 2.58 1.4 0.539 -- -0.237 19.8 11.41 1654 -- --
139.06 0.549 6.01 2.08 2.61 0.976 -- 5.29 0.089 19.2 10.92 1777 -- --
143.69 0.562 6.17 0.946 2.5 1.49 -- -- -0.267 20 22.75 2471 -- --
334.78 0.852 6 1.63 -- 2.36 -- 6.1 -0.145 -- 24.3 508 -- --
178.29 0.626 6.12 1.25 2.66 -- 0.654 -- -0.0414 19.2 -- -- -- --
179.43 0.627 6.12 1.23 2.66 -- -- -- -0.0399 19.2 -- -- -- --
310.59 0.821 6.14 0.656 -- 2.96 -- -- -0.418 -- 24.3 475 -- --
165.91 0.603 6.21 -- 2.48 1.77 -- -- -0.409 20.2 22.75 2471 -- --
554.15 1.1 6.06 1.18 -- -- -- -- -0.086 -- -- -- -- --
219.51 0.693 6.15 -- 2.65 -- -- -- -0.177 19.2 -- -- -- --
321.41 0.835 6.15 -- -- 3.01 -- -- -0.461 -- 24.2 489 -- --
591.18 1.13 6.09 -- -- -- -- -- -0.217 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.70 temperature 20 270 > th dose dependent rect. 2 14
11 129.28 temperature 30 270 < th dose dependent rect. 6 13
12 129.44 temperature 20 10 > th dose dependent rect. 3 17
33 132.06 temperature 20 270 > th dose dependent sin 1 NA
45 132.78 temperature 30 270 < th dose dependent sin 0 NA
65 133.86 temperature 10 270 > th dose dependent sin 1 NA
72 134.26 temperature 30 1440 < th dose dependent rect. 18 1
79 134.42 temperature 30 1440 < th dose dependent rect. 17 4
85 134.53 temperature 30 30 < th dose dependent rect. 7 16
98 134.91 temperature 10 1440 > th dose dependent rect. 17 4
100 134.93 temperature 10 1440 > th dose dependent rect. 18 1
201 136.70 temperature 25 90 > th dose dependent sin 22 NA
223 137.06 temperature 25 270 < th dose independent rect. 6 13
232 137.14 temperature 20 720 > th dose dependent rect. 21 17
238 137.21 temperature 10 1440 > th dose dependent rect. 11 11
244 137.25 temperature 20 720 > th dose dependent rect. 19 20
249 137.29 temperature 10 1440 > th dose dependent sin 18 NA
258 137.38 temperature 10 720 > th dose dependent rect. 3 19
272 137.49 temperature 10 270 > th dose dependent rect. 9 22
281 137.56 temperature 20 720 > th dose dependent sin 6 NA
540 138.34 temperature 30 1440 < th dose dependent sin 17 NA
556 138.36 temperature 30 30 < th dose dependent rect. 9 14
614 138.48 temperature 25 90 > th dose dependent rect. 10 23
690 138.66 temperature 10 1440 > th dose dependent no NA NA
718 138.70 temperature 10 1440 > th dose dependent rect. 15 23
741 138.77 temperature 10 1440 > th dose dependent rect. 13 23
847 139.03 temperature 30 1440 < th dose dependent rect. 5 17
894 139.17 temperature 30 1440 < th dose dependent rect. 10 16
911 139.19 temperature 30 1440 < th dose dependent rect. 7 19
942 139.26 temperature 20 720 > th dose dependent rect. 3 6