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Os05g0409500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MtN21 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0418) R2 : 0.786
β1 : 4.5 (0.182) R2dD : 0.527 R2D : 0.332
β2 : 0.54 (0.0976) R2dC : 0.0146 R2C : -0.0333
β3 : -7.39 (0.352) R2dE : 0.672 R2E : 0.361
β4 : -3.87 (0.448) R2dD*C : 0.035 R2D*C : -0.0352
β5 : -13.6 (1.17) R2dD*E : 0.294 R2D*E : -0.919
γ1 : 0.826 (0.0851) R2dN8 : 0.0678 R2N8 : 0.0232
σ : 0.704
deviance : 224.81
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_____
C
peak time of C : 5.73
E
wheather : radiation
threshold : 0.4579
memory length : 1461
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.81 0.704 13.2 4.5 0.54 -7.39 -3.87 -13.6 0.826 5.73 0.4579 1461 -- --
291.77 0.796 13.4 3.15 0.734 -4.59 -4.26 -- 0.519 5.48 0.475 1488 -- --
259.48 0.75 13.2 4.56 0.567 -7.66 -- -14.8 0.862 6.53 0.4 1455 -- --
321.18 0.835 13.4 3.28 0.657 -4.33 -- -- 0.673 4.7 0.4881 1500 -- --
270.94 0.767 13.2 4.49 -- -7.72 -- -14.5 0.881 -- 0.2989 1457 -- --
473.48 1.02 13.3 4.32 0.643 -- -3.41 -- 1.16 6.26 -- -- -- --
497.75 1.04 13.3 4.29 0.678 -- -- -- 1.17 7.81 -- -- -- --
340.41 0.859 13.4 3.28 -- -4.18 -- -- 0.701 -- 0.48 1474 -- --
297.03 0.803 13.5 -- 0.772 -4.01 -- -- -0.21 6.7 0.0129 37948 -- --
522.62 1.07 13.3 4.3 -- -- -- -- 1.18 -- -- -- -- --
982.66 1.47 13.4 -- 0.714 -- -- -- 0.694 7.39 -- -- -- --
329.21 0.845 13.7 -- -- -4.07 -- -- -0.416 -- 0.004461 47520 -- --
1009.77 1.48 13.4 -- -- -- -- -- 0.705 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.16 humidity 90 43200 > th dose independent rect. 20 5
3 197.59 humidity 90 43200 > th dose independent rect. 21 3
10 199.78 humidity 80 43200 > th dose independent rect. 13 1
15 200.93 humidity 90 43200 < th dose independent rect. 19 6
16 201.13 humidity 80 43200 < th dose independent rect. 13 1
17 201.19 humidity 90 43200 < th dose independent rect. 21 1
23 202.82 humidity 90 43200 < th dose independent rect. 21 3
33 204.87 humidity 90 43200 > th dose dependent rect. 19 7
40 206.36 humidity 90 43200 > th dose dependent rect. 21 4
43 206.60 humidity 90 43200 > th dose dependent rect. 19 14
76 208.01 humidity 90 43200 > th dose independent sin 15 NA
78 208.03 humidity 90 43200 > th dose dependent sin 9 NA
110 208.94 radiation 30 43200 < th dose dependent rect. 20 9
161 209.86 humidity 90 43200 > th dose independent rect. 19 16
207 210.65 humidity 90 43200 < th dose independent sin 16 NA
333 213.04 humidity 90 43200 > th dose independent rect. 9 21
350 213.27 radiation 20 43200 < th dose dependent rect. 2 3
363 213.55 humidity 90 43200 > th dose independent rect. 9 19
368 213.67 humidity 90 43200 > th dose dependent no NA NA
377 213.75 radiation 1 43200 < th dose independent rect. 20 9
457 215.05 radiation 40 43200 < th dose independent rect. 15 17
460 215.07 humidity 90 43200 > th dose dependent rect. 5 23
463 215.21 radiation 30 43200 < th dose independent rect. 16 14
465 215.23 radiation 1 43200 < th dose independent rect. 22 7
468 215.26 radiation 30 43200 < th dose independent rect. 16 12
501 215.62 radiation 40 43200 < th dose independent rect. 15 8
517 215.83 radiation 40 43200 < th dose independent rect. 20 12
531 215.95 radiation 40 43200 < th dose independent rect. 15 1
553 216.26 radiation 40 43200 < th dose independent rect. 22 10
554 216.27 humidity 90 43200 < th dose independent rect. 17 19
558 216.30 humidity 90 43200 < th dose independent rect. 9 21
571 216.57 radiation 1 43200 < th dose independent rect. 24 5
577 216.65 radiation 40 43200 < th dose independent rect. 24 8
579 216.67 radiation 40 43200 < th dose independent rect. 2 6
583 216.70 radiation 1 43200 < th dose independent rect. 2 3
589 216.75 humidity 90 43200 > th dose dependent rect. 3 23
600 216.95 radiation 40 43200 < th dose independent rect. 6 2
616 217.15 temperature 15 43200 > th dose independent rect. 10 18
631 217.42 temperature 15 43200 < th dose independent rect. 17 11
638 217.48 temperature 15 43200 < th dose independent rect. 10 18
642 217.52 radiation 1 43200 > th dose independent rect. 4 1
654 217.52 radiation 1 43200 > th dose dependent rect. 4 1
672 217.66 humidity 90 43200 > th dose independent no NA NA
681 217.77 radiation 1 43200 < th dose independent rect. 4 1
700 217.92 temperature 15 43200 > th dose independent rect. 13 15
715 218.04 temperature 15 43200 > th dose independent rect. 17 11
719 218.05 temperature 15 43200 < th dose independent rect. 13 15
725 218.11 temperature 15 43200 > th dose independent rect. 10 4
733 218.18 humidity 90 43200 > th dose independent rect. 5 23
735 218.19 temperature 15 43200 < th dose independent rect. 18 20
742 218.27 temperature 15 43200 < th dose independent sin 13 NA
748 218.28 temperature 15 43200 < th dose independent rect. 21 18
767 218.36 temperature 15 43200 < th dose independent rect. 24 15
803 218.50 humidity 90 43200 > th dose dependent rect. 5 1
837 218.64 temperature 15 43200 < th dose independent rect. 21 22
853 218.68 temperature 15 43200 < th dose independent rect. 5 23
860 218.71 temperature 15 43200 < th dose independent rect. 24 20
871 218.74 temperature 15 43200 < th dose independent rect. 13 23
890 218.80 temperature 15 43200 < th dose independent rect. 24 23
900 218.84 temperature 15 43200 < th dose independent rect. 1 1
921 218.89 temperature 15 43200 < th dose independent no NA NA
961 219.05 temperature 15 43200 > th dose independent sin 15 NA