Os05g0407900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0407900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 260.55 | 0.758 | 5.04 | 1.22 | 0.662 | 1.63 | 1.64 | -2.42 | 0.314 | 15.7 | 80.31 | 1267 | -- | -- |
| 263.97 | 0.757 | 5.05 | 1.13 | 0.626 | 1.56 | 1.56 | -- | 0.282 | 16.2 | 77 | 1219 | -- | -- |
| 267.11 | 0.761 | 5.04 | 1.23 | 0.773 | 1.71 | -- | -2.5 | 0.317 | 15.1 | 81 | 1373 | -- | -- |
| 270.26 | 0.766 | 5.04 | 1.15 | 0.662 | 1.54 | -- | -- | 0.288 | 15.7 | 77 | 1243 | -- | -- |
| 291.38 | 0.795 | 5.04 | 1.17 | -- | 1.91 | -- | -1.86 | 0.312 | -- | 80 | 1256 | -- | -- |
| 297.45 | 0.809 | 5.07 | 0.984 | 0.848 | -- | 1.46 | -- | 0.176 | 15.3 | -- | -- | -- | -- |
| 304.19 | 0.817 | 5.07 | 1.01 | 0.852 | -- | -- | -- | 0.184 | 15.1 | -- | -- | -- | -- |
| 292.09 | 0.796 | 5.04 | 1.14 | -- | 1.85 | -- | -- | 0.287 | -- | 76.73 | 1230 | -- | -- |
| 300.7 | 0.808 | 5.07 | -- | 0.652 | 1.5 | -- | -- | 0.165 | 15.3 | 80.63 | 1280 | -- | -- |
| 345.54 | 0.869 | 5.07 | 0.976 | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
| 331.17 | 0.851 | 5.09 | -- | 0.832 | -- | -- | -- | 0.0716 | 15.1 | -- | -- | -- | -- |
| 321.23 | 0.835 | 5.07 | -- | -- | 1.71 | -- | -- | 0.169 | -- | 83.9 | 1257 | -- | -- |
| 370.65 | 0.899 | 5.09 | -- | -- | -- | -- | -- | 0.0538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 19 | 260.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 20 | 261.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 25 | 261.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 28 | 261.21 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 34 | 261.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 38 | 261.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 40 | 261.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 45 | 261.51 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 64 | 261.83 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 5 |
| 66 | 261.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 69 | 261.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 70 | 261.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 95 | 262.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 100 | 262.24 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 115 | 262.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 116 | 262.36 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 7 |
| 149 | 262.52 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 196 | 262.87 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 198 | 262.90 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 201 | 262.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 210 | 262.97 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 212 | 262.99 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 244 | 263.33 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 294 | 263.77 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 14 |
| 335 | 264.08 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 351 | 264.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 360 | 264.24 | humidity | 50 | 1440 | > th | dose dependent | sin | 16 | NA |
| 365 | 264.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 387 | 264.37 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 393 | 264.40 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 418 | 264.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 426 | 264.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 430 | 264.55 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 438 | 264.59 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 472 | 264.73 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 488 | 264.81 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 636 | 265.33 | humidity | 90 | 1440 | < th | dose dependent | sin | 16 | NA |
| 642 | 265.34 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 718 | 265.61 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 773 | 265.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 778 | 265.82 | humidity | 70 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 833 | 266.01 | humidity | 50 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 848 | 266.06 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 858 | 266.09 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 866 | 266.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 871 | 266.13 | humidity | 50 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 872 | 266.14 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 935 | 266.32 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |