Os05g0407100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Four F5 protein family protein.
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Os05g0407100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Four F5 protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 584.5 | 1.14 | 8.44 | -1.4 | 5.91 | 6.38 | 1.51 | 0.911 | -0.625 | 9.68 | 15.16 | 11 | 5.98 | 20 |
| 585.74 | 1.13 | 8.44 | -1.41 | 5.91 | 6.37 | 1.62 | -- | -0.627 | 9.69 | 15.16 | 11 | 5.99 | 20 |
| 592.58 | 1.13 | 8.44 | -1.3 | 5.9 | 6.4 | -- | 1.57 | -0.626 | 9.67 | 15.2 | 12 | 5.98 | 20 |
| 595.82 | 1.14 | 8.45 | -1.44 | 5.91 | 6.4 | -- | -- | -0.645 | 9.69 | 15.2 | 11 | 6 | 20 |
| 992.47 | 1.47 | 8.48 | -0.29 | -- | 8.06 | -- | 3.72 | -0.281 | -- | 10.65 | 31 | 5.77 | 11.9 |
| 1158.98 | 1.6 | 8.27 | -0.467 | 7.08 | -- | 2.22 | -- | 0.274 | 11.8 | -- | -- | -- | -- |
| 1180.35 | 1.61 | 8.27 | -0.379 | 7.07 | -- | -- | -- | 0.283 | 11.7 | -- | -- | -- | -- |
| 964.71 | 1.45 | 8.49 | -0.603 | -- | 7.98 | -- | -- | -0.181 | -- | 9.494 | 38 | 5.75 | 11.9 |
| 648.19 | 1.19 | 8.41 | -- | 5.96 | 6.02 | -- | -- | -0.475 | 9.74 | 14.61 | 12 | 6.1 | 19.8 |
| 4326.9 | 3.07 | 8.42 | -0.584 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 1184.13 | 1.61 | 8.26 | -- | 7.08 | -- | -- | -- | 0.325 | 11.7 | -- | -- | -- | -- |
| 973.1 | 1.45 | 8.54 | -- | -- | 7.71 | -- | -- | -0.33 | -- | 7.189 | 53 | 5.63 | 11.8 |
| 4335.89 | 3.07 | 8.41 | -- | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 591.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 13 | 657.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 69 | 711.48 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 79 | 714.88 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 130 | 736.82 | temperature | 25 | 10 | < th | dose dependent | sin | 0 | NA |
| 224 | 765.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 270 | 775.61 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 17 |
| 274 | 776.08 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 15 |
| 307 | 781.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 343 | 787.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 348 | 788.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 349 | 788.14 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 380 | 792.61 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 385 | 793.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 422 | 800.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 434 | 801.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 451 | 804.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 474 | 807.48 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 476 | 807.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 491 | 809.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 497 | 810.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 560 | 818.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 562 | 818.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 569 | 819.38 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 584 | 820.71 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 596 | 822.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 621 | 824.28 | temperature | 25 | 30 | > th | dose independent | sin | 4 | NA |
| 641 | 826.56 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 647 | 827.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 651 | 827.35 | radiation | 10 | 90 | < th | dose dependent | sin | 2 | NA |
| 657 | 828.00 | temperature | 25 | 30 | < th | dose independent | sin | 4 | NA |
| 694 | 831.33 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 19 |
| 732 | 834.73 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 771 | 837.94 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 12 |
| 785 | 838.80 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 22 |
| 826 | 843.65 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 854 | 845.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 925 | 850.71 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 929 | 851.08 | radiation | 1 | 90 | < th | dose independent | sin | 2 | NA |
| 941 | 852.01 | radiation | 1 | 90 | > th | dose independent | sin | 2 | NA |
| 955 | 852.79 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 20 |
| 977 | 854.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 990 | 854.86 | radiation | 10 | 90 | < th | dose dependent | rect. | 2 | 15 |