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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0406800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0429) R2 : 3.49e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0114 (0.0903) R2dN8 : 4.5e-05 R2N8 : 3.49e-05
σ : 0.808
deviance : 299.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.65 0.766 3.42 0.234 0.815 -0.569 0.997 -1.38 0.0203 4.55 80.54 646 -- --
269.48 0.765 3.42 0.154 0.812 -0.538 0.546 -- 0.00839 4.34 82.28 604 -- --
267.87 0.762 3.42 0.207 0.762 -0.532 -- -1.13 0.0126 4.38 80.21 687 -- --
270.25 0.766 3.43 0.159 0.82 -0.544 -- -- -0.000956 4.37 82.24 604 -- --
282.54 0.783 3.45 0.172 -- -0.883 -- -0.5 -0.0288 -- 78.05 1211 -- --
276.85 0.78 3.43 0.156 0.603 -- 0.438 -- 0.0176 2.73 -- -- -- --
277.52 0.78 3.43 0.146 0.604 -- -- -- 0.0151 2.7 -- -- -- --
283.55 0.784 3.44 0.11 -- -0.986 -- -- -0.0201 -- 79 1197 -- --
270.92 0.767 3.43 -- 0.819 -0.537 -- -- -0.0147 4.35 82 604 -- --
298.78 0.808 3.43 0.172 -- -- -- -- 0.0304 -- -- -- -- --
278.08 0.78 3.44 -- 0.607 -- -- -- -0.00114 2.71 -- -- -- --
283.88 0.785 3.44 -- -- -0.998 -- -- -0.0332 -- 78.76 1197 -- --
299.56 0.808 3.43 -- -- -- -- -- 0.0114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.18 temperature 20.0 270 < th dose independent rect. 24 5
2 262.45 temperature 25.0 30 < th dose dependent rect. 3 12
7 262.66 radiation 10.0 30 < th dose independent rect. 13 2
9 262.68 radiation 10.0 10 < th dose dependent rect. 14 1
13 262.75 precipitation 0.1 90 > th dose independent rect. 13 1
16 262.75 precipitation 0.1 90 > th dose dependent rect. 13 1
28 262.98 temperature 20.0 30 < th dose dependent rect. 24 7
32 263.08 humidity 70.0 4320 > th dose independent rect. 21 6
51 263.60 temperature 20.0 270 < th dose dependent rect. 23 6
65 263.96 humidity 80.0 720 < th dose independent rect. 16 18
75 264.19 humidity 80.0 720 < th dose independent rect. 16 21
92 264.43 temperature 20.0 30 < th dose independent rect. 2 4
111 264.67 humidity 80.0 1440 < th dose independent rect. 20 14
115 264.71 humidity 80.0 1440 > th dose independent rect. 2 6
117 264.71 radiation 1.0 720 < th dose dependent rect. 6 20
124 264.80 temperature 20.0 270 < th dose independent rect. 3 1
135 264.87 humidity 80.0 1440 < th dose independent rect. 24 10
141 264.93 humidity 90.0 720 < th dose dependent rect. 16 18
150 264.98 humidity 80.0 1440 > th dose independent rect. 20 14
155 265.02 humidity 80.0 1440 < th dose independent sin 8 NA
177 265.15 humidity 90.0 720 < th dose dependent sin 10 NA
180 265.18 humidity 80.0 1440 > th dose independent sin 8 NA
186 265.20 humidity 80.0 720 > th dose independent rect. 4 22
191 265.21 humidity 80.0 720 > th dose independent rect. 14 20
230 265.45 humidity 80.0 1440 < th dose independent rect. 2 6
270 265.66 temperature 20.0 270 < th dose dependent rect. 1 1
292 265.72 radiation 40.0 10 < th dose dependent rect. 3 12
313 265.82 humidity 80.0 720 > th dose independent rect. 19 23
321 265.85 temperature 25.0 10 < th dose independent rect. 3 12
343 265.93 radiation 1.0 43200 < th dose dependent rect. 9 4
350 265.96 radiation 10.0 90 < th dose dependent rect. 8 6
357 265.99 radiation 40.0 10 < th dose dependent rect. 3 17
369 266.03 radiation 10.0 10 < th dose dependent rect. 10 5
388 266.08 radiation 1.0 43200 < th dose dependent rect. 8 6
389 266.09 radiation 1.0 43200 < th dose independent rect. 10 3
394 266.11 radiation 30.0 4320 < th dose independent rect. 3 4
395 266.11 humidity 80.0 720 > th dose independent rect. 11 23
411 266.17 radiation 1.0 43200 > th dose independent rect. 10 3
428 266.20 radiation 1.0 43200 < th dose dependent rect. 12 1
435 266.22 atmosphere 1010.0 270 > th dose independent rect. 12 1
445 266.22 humidity 80.0 720 < th dose independent rect. 23 22
446 266.23 humidity 80.0 720 > th dose independent no NA NA
452 266.23 radiation 10.0 10 < th dose dependent sin 1 NA
470 266.29 humidity 80.0 43200 < th dose independent rect. 2 14
475 266.30 humidity 80.0 43200 > th dose independent rect. 2 14
479 266.31 radiation 1.0 43200 < th dose independent rect. 8 6
494 266.34 radiation 1.0 43200 > th dose independent rect. 8 6
522 266.39 temperature 25.0 10 < th dose dependent rect. 13 1
525 266.40 humidity 80.0 720 < th dose independent no NA NA
528 266.40 temperature 25.0 30 < th dose dependent sin 2 NA
544 266.43 radiation 1.0 43200 > th dose independent rect. 12 2
555 266.45 radiation 1.0 43200 < th dose independent rect. 12 2
557 266.45 radiation 10.0 10 < th dose independent rect. 3 17
570 266.46 radiation 10.0 10 < th dose dependent rect. 8 7
588 266.50 humidity 80.0 43200 > th dose independent rect. 3 12
589 266.50 humidity 80.0 43200 < th dose independent rect. 3 12
599 266.51 humidity 80.0 720 < th dose independent rect. 19 23
604 266.52 humidity 80.0 720 > th dose independent rect. 23 23
607 266.52 temperature 30.0 10 < th dose dependent rect. 3 6
634 266.56 humidity 80.0 720 < th dose independent rect. 11 23
647 266.59 humidity 80.0 720 < th dose independent rect. 7 23
677 266.64 temperature 30.0 270 < th dose dependent rect. 1 4
691 266.67 humidity 80.0 43200 > th dose independent rect. 1 16
695 266.68 wind 1.0 10 < th dose dependent rect. 21 2
755 266.77 radiation 10.0 10 < th dose independent rect. 3 12
759 266.77 wind 1.0 10 < th dose dependent rect. 15 8
778 266.81 humidity 90.0 1440 < th dose dependent rect. 20 12
830 266.91 radiation 1.0 720 < th dose independent rect. 8 18
844 266.94 humidity 80.0 43200 < th dose independent sin 3 NA
850 266.95 humidity 60.0 14400 > th dose independent rect. 3 5
883 266.99 humidity 90.0 720 > th dose dependent rect. 9 9
901 267.01 temperature 30.0 10 < th dose dependent rect. 3 3
909 267.03 humidity 80.0 43200 > th dose independent sin 3 NA
912 267.03 humidity 50.0 720 > th dose dependent rect. 19 15
924 267.05 humidity 90.0 720 > th dose dependent rect. 9 11
953 267.09 humidity 80.0 43200 > th dose independent rect. 24 18
960 267.11 radiation 20.0 43200 < th dose independent rect. 3 3
984 267.13 radiation 1.0 720 < th dose independent rect. 12 14
994 267.14 wind 1.0 10 < th dose independent rect. 22 1