Os05g0406700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0406700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.09 | 0.723 | 5.5 | -2.49 | 0.991 | 2.36 | 0.378 | -4.27 | -0.293 | 0.306 | 25.83 | 5132 | -- | -- |
| 236.62 | 0.716 | 5.46 | -1.69 | 1.07 | 2.17 | 0.177 | -- | -0.486 | 23.7 | 23.1 | 7985 | -- | -- |
| 237.69 | 0.718 | 5.49 | -2.48 | 0.989 | 2.36 | -- | -4.19 | -0.289 | 0.341 | 25.85 | 5134 | -- | -- |
| 236.81 | 0.717 | 5.45 | -1.64 | 1.07 | 2.15 | -- | -- | -0.492 | 23.8 | 23.06 | 7980 | -- | -- |
| 296.15 | 0.802 | 5.48 | -2.53 | -- | 2.57 | -- | -4.17 | -0.321 | -- | 25.81 | 5231 | -- | -- |
| 384.1 | 0.919 | 5.25 | -0.367 | 1.19 | -- | 0.429 | -- | 0.427 | 24 | -- | -- | -- | -- |
| 384.9 | 0.919 | 5.25 | -0.385 | 1.19 | -- | -- | -- | 0.425 | 24 | -- | -- | -- | -- |
| 308.69 | 0.818 | 5.45 | -1.69 | -- | 2.28 | -- | -- | -0.535 | -- | 23.03 | 8046 | -- | -- |
| 284.17 | 0.785 | 5.32 | -- | 1.14 | 1.61 | -- | -- | 0.153 | 0.445 | 26.8 | 6214 | -- | -- |
| 473.75 | 1.02 | 5.22 | -0.348 | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
| 388.8 | 0.922 | 5.24 | -- | 1.18 | -- | -- | -- | 0.467 | 24 | -- | -- | -- | -- |
| 334.25 | 0.852 | 5.3 | -- | -- | 1.9 | -- | -- | 0.0951 | -- | 26.51 | 2361 | -- | -- |
| 476.94 | 1.02 | 5.21 | -- | -- | -- | -- | -- | 0.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 233.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 234.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 3 | 234.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 5 | 234.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 37 | 237.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 38 | 237.55 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 72 | 238.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 155 | 238.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 173 | 238.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 187 | 239.08 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 284 | 239.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 306 | 239.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 683 | 241.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 14 |
| 733 | 241.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 14 |
| 763 | 241.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |