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Os05g0405500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0136) R2 : 0.822
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.58 (0.0345) R2dC : 0.823 R2C : 0.822
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00168 (0.0286) R2dN8 : 1.74e-06 R2N8 : -0.000489
σ : 0.256
deviance : 30.01
__
_____
C
peak time of C : 3.72
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.52 0.233 11.5 -0.282 1.21 0.47 0.102 -0.22 -0.00308 4.27 22.79 250 -- --
24.63 0.231 11.5 -0.291 1.21 0.459 0.00979 -- -0.00828 4.22 23.94 251 -- --
24.53 0.231 11.5 -0.285 1.22 0.467 -- -0.164 -0.00412 4.27 22.98 245 -- --
24.61 0.231 11.5 -0.284 1.22 0.462 -- -- -0.00538 4.24 24.13 246 -- --
26.95 0.242 11.5 -0.208 -- 1.58 -- -0.0631 0.0419 -- 2.53 493 -- --
27.37 0.245 11.5 -0.317 1.59 -- -0.0692 -- -0.0373 3.72 -- -- -- --
27.38 0.245 11.5 -0.316 1.59 -- -- -- -0.0369 3.72 -- -- -- --
26.96 0.242 11.5 -0.224 -- 1.56 -- -- 0.0381 -- 2.57 491 -- --
26.72 0.241 11.5 -- 1.19 0.504 -- -- 0.0293 4.31 24.08 246 -- --
167.18 0.604 11.5 -0.25 -- -- -- -- 0.00548 -- -- -- -- --
30.01 0.256 11.5 -- 1.58 -- -- -- -0.00168 3.72 -- -- -- --
28.28 0.248 11.5 -- -- 1.56 -- -- 0.0613 -- 2.385 491 -- --
168.83 0.606 11.5 -- -- -- -- -- 0.0332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.92 temperature 10.0 270 > th dose dependent rect. 20 20
2 20.96 temperature 10.0 90 > th dose dependent rect. 22 19
10 21.54 temperature 10.0 10 > th dose dependent rect. 22 20
16 21.67 atmosphere 995.0 270 > th dose dependent rect. 16 4
27 21.87 temperature 20.0 90 > th dose independent rect. 22 19
32 21.93 atmosphere 995.0 270 > th dose dependent rect. 15 6
37 22.01 radiation 1.0 270 < th dose dependent rect. 16 3
38 22.02 atmosphere 995.0 270 > th dose independent rect. 16 5
39 22.02 atmosphere 995.0 270 > th dose dependent rect. 17 2
41 22.04 wind 9.0 270 < th dose independent rect. 21 19
43 22.07 precipitation 0.1 270 < th dose independent rect. 11 14
44 22.07 precipitation 0.1 270 < th dose dependent rect. 11 14
47 22.09 precipitation 0.1 270 < th dose independent rect. 21 19
49 22.09 precipitation 0.1 270 < th dose dependent rect. 21 19
50 22.11 temperature 10.0 270 > th dose independent rect. 16 5
51 22.11 radiation 30.0 270 < th dose independent rect. 16 5
53 22.11 temperature 10.0 270 > th dose independent rect. 21 19
56 22.12 wind 9.0 270 < th dose independent rect. 16 5
63 22.20 atmosphere 1015.0 270 < th dose independent rect. 16 5
65 22.21 wind 1.0 270 > th dose independent rect. 16 5
77 22.28 radiation 40.0 270 < th dose dependent rect. 15 6
78 22.29 radiation 1.0 270 < th dose independent rect. 16 3
79 22.29 radiation 40.0 270 < th dose dependent rect. 16 4
101 22.37 precipitation 0.1 270 < th dose independent rect. 19 22
102 22.37 radiation 20.0 270 < th dose dependent rect. 17 2
104 22.37 precipitation 0.1 270 < th dose dependent rect. 19 22
112 22.38 radiation 30.0 270 < th dose dependent rect. 16 17
125 22.41 atmosphere 995.0 270 > th dose independent rect. 17 2
126 22.41 precipitation 0.1 270 < th dose independent rect. 16 5
130 22.41 precipitation 0.1 270 < th dose dependent rect. 16 5
144 22.47 radiation 40.0 270 < th dose dependent rect. 15 20
145 22.48 precipitation 0.1 270 < th dose independent rect. 1 10
147 22.48 precipitation 0.1 270 < th dose dependent rect. 1 10
149 22.49 temperature 10.0 270 > th dose independent rect. 1 10
150 22.49 atmosphere 995.0 270 > th dose independent rect. 1 10
151 22.49 atmosphere 1015.0 270 < th dose independent rect. 1 10
152 22.49 temperature 10.0 270 > th dose independent rect. 11 14
161 22.51 wind 9.0 270 < th dose independent rect. 17 2
162 22.51 temperature 10.0 270 > th dose independent rect. 17 2
164 22.51 atmosphere 1010.0 270 < th dose independent rect. 17 2
166 22.51 radiation 20.0 270 < th dose independent rect. 17 2
171 22.51 temperature 30.0 270 < th dose independent rect. 1 10
172 22.51 temperature 10.0 270 > th dose independent rect. 19 22
175 22.52 humidity 50.0 270 > th dose independent rect. 17 2
177 22.52 wind 9.0 270 < th dose independent rect. 19 22
178 22.53 wind 9.0 270 < th dose independent rect. 1 10
179 22.53 humidity 50.0 270 > th dose independent rect. 21 19
183 22.54 atmosphere 995.0 270 > th dose independent rect. 21 19
184 22.54 temperature 10.0 270 > th dose dependent rect. 6 10
186 22.55 wind 9.0 270 < th dose independent rect. 11 14
194 22.56 radiation 1.0 270 < th dose dependent rect. 6 13
198 22.57 humidity 50.0 270 > th dose independent rect. 1 10
201 22.58 wind 1.0 270 > th dose independent rect. 17 2
208 22.59 radiation 1.0 30 < th dose dependent rect. 16 6
213 22.60 radiation 40.0 270 < th dose independent rect. 2 9
234 22.64 precipitation 0.1 270 < th dose independent rect. 17 2
237 22.64 precipitation 0.1 270 < th dose dependent rect. 17 2
240 22.65 atmosphere 1015.0 270 < th dose independent rect. 21 19
245 22.66 humidity 70.0 270 > th dose independent rect. 2 18
259 22.69 humidity 50.0 270 > th dose dependent rect. 17 2
267 22.70 humidity 60.0 270 > th dose dependent rect. 2 19
274 22.71 radiation 10.0 270 < th dose dependent rect. 8 12
283 22.73 radiation 1.0 270 > th dose independent rect. 6 10
291 22.73 radiation 1.0 30 < th dose dependent rect. 6 16
293 22.74 radiation 1.0 270 < th dose independent rect. 6 13
316 22.78 humidity 70.0 270 > th dose independent rect. 1 20
350 22.81 humidity 50.0 90 > th dose dependent rect. 17 4
353 22.81 radiation 40.0 270 < th dose dependent rect. 2 19
367 22.82 atmosphere 995.0 10 > th dose dependent rect. 18 4
403 22.86 humidity 80.0 270 < th dose independent rect. 8 8
443 22.89 wind 9.0 270 < th dose dependent rect. 17 2
469 22.91 humidity 50.0 270 > th dose dependent rect. 2 10
512 22.95 wind 9.0 270 < th dose dependent rect. 16 4
521 22.96 radiation 20.0 270 < th dose independent rect. 16 18
570 23.00 radiation 40.0 270 < th dose dependent rect. 3 17
580 23.01 radiation 1.0 30 < th dose dependent sin 20 NA
600 23.03 temperature 20.0 270 > th dose independent rect. 21 5
605 23.03 radiation 1.0 270 < th dose independent rect. 9 10
611 23.03 radiation 1.0 30 < th dose independent rect. 7 15
613 23.03 humidity 50.0 10 > th dose dependent rect. 17 5
642 23.05 wind 9.0 10 < th dose independent rect. 22 20
664 23.07 wind 1.0 10 > th dose independent rect. 18 4
688 23.08 radiation 20.0 270 < th dose independent rect. 2 19
771 23.14 atmosphere 995.0 10 > th dose independent rect. 18 4
790 23.15 wind 9.0 10 < th dose independent rect. 18 4
791 23.15 temperature 10.0 10 > th dose independent rect. 18 4
793 23.15 humidity 50.0 10 > th dose independent rect. 18 4
796 23.15 atmosphere 1010.0 10 < th dose independent rect. 18 4
808 23.15 temperature 10.0 10 > th dose independent rect. 22 20
859 23.19 radiation 1.0 90 > th dose independent sin 21 NA
897 23.21 precipitation 0.1 10 < th dose independent rect. 22 20
903 23.21 precipitation 0.1 10 < th dose dependent rect. 22 20
906 23.22 wind 9.0 270 < th dose independent rect. 6 10
907 23.22 humidity 70.0 270 > th dose independent rect. 2 10
908 23.22 precipitation 0.1 270 < th dose independent rect. 6 10
915 23.22 precipitation 0.1 270 < th dose dependent rect. 6 10
931 23.23 radiation 20.0 270 < th dose independent rect. 16 14
959 23.25 radiation 1.0 90 < th dose independent sin 21 NA
961 23.25 wind 9.0 270 < th dose independent rect. 16 14
962 23.25 atmosphere 995.0 270 > th dose independent rect. 16 14
965 23.25 radiation 40.0 90 < th dose independent rect. 17 20
976 23.25 humidity 50.0 90 > th dose dependent rect. 17 19