Os05g0405400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0405400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 314.03 | 0.833 | 5.7 | 2.8 | 1.9 | -1.29 | -1.38 | -1.44 | -0.388 | 3.47 | 26 | 734 | -- | -- |
| 315.41 | 0.827 | 5.65 | 3.19 | 1.89 | -1.42 | -1.34 | -- | -0.273 | 3.38 | 26.28 | 749 | -- | -- |
| 318.53 | 0.831 | 5.69 | 2.86 | 1.98 | -1.3 | -- | -1.4 | -0.389 | 3.61 | 26.3 | 795 | -- | -- |
| 319.88 | 0.833 | 5.66 | 3.2 | 2.05 | -1.43 | -- | -- | -0.329 | 3.68 | 26.6 | 858 | -- | -- |
| 420.52 | 0.955 | 5.61 | 3.08 | -- | -1.77 | -- | -0.711 | -0.157 | -- | 26.2 | 394 | -- | -- |
| 374.96 | 0.908 | 5.72 | 2.76 | 2.16 | -- | -0.716 | -- | -0.663 | 4.63 | -- | -- | -- | -- |
| 376.21 | 0.908 | 5.72 | 2.77 | 2.16 | -- | -- | -- | -0.659 | 4.7 | -- | -- | -- | -- |
| 418.4 | 0.953 | 5.62 | 3.34 | -- | -1.81 | -- | -- | -0.0735 | -- | 26.26 | 394 | -- | -- |
| 568.4 | 1.11 | 5.77 | -- | 2.2 | -0.588 | -- | -- | -0.85 | 4.24 | 26.7 | 874 | -- | -- |
| 624.44 | 1.17 | 5.74 | 2.85 | -- | -- | -- | -- | -0.603 | -- | -- | -- | -- | -- |
| 578.2 | 1.12 | 5.79 | -- | 2.21 | -- | -- | -- | -0.968 | 4.67 | -- | -- | -- | -- |
| 701.45 | 1.23 | 5.72 | -- | -- | -1.42 | -- | -- | -0.517 | -- | 25.87 | 366 | -- | -- |
| 838.76 | 1.35 | 5.81 | -- | -- | -- | -- | -- | -0.919 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 299.34 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 7 |
| 23 | 304.89 | temperature | 25.0 | 720 | > th | dose independent | sin | 19 | NA |
| 38 | 307.87 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 54 | 309.36 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 124 | 313.25 | temperature | 15.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 131 | 313.51 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 164 | 314.50 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 12 | 10 |
| 179 | 314.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 198 | 315.69 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 271 | 317.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 446 | 320.98 | temperature | 10.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 499 | 321.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 513 | 322.10 | temperature | 25.0 | 720 | < th | dose independent | sin | 19 | NA |
| 574 | 323.07 | temperature | 30.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 587 | 323.27 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 20 |
| 597 | 323.41 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 599 | 323.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 618 | 323.63 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 659 | 324.30 | temperature | 30.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 684 | 324.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 803 | 325.99 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 805 | 326.00 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 811 | 326.06 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 815 | 326.09 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 840 | 326.36 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 850 | 326.43 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 857 | 326.48 | temperature | 20.0 | 90 | > th | dose independent | rect. | 16 | 13 |
| 875 | 326.55 | temperature | 25.0 | 720 | > th | dose independent | no | NA | NA |
| 880 | 326.62 | temperature | 25.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 911 | 326.83 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 920 | 326.91 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 922 | 326.94 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 22 |
| 961 | 327.29 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 984 | 327.49 | wind | 7.0 | 4320 | > th | dose independent | rect. | 8 | 1 |