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Os05g0404300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.82 (0.0166) R2 : 0.0101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0753 (0.0349) R2dN8 : 0.013 R2N8 : 0.0101
σ : 0.312
deviance : 44.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.82 0.281 9.87 -0.492 0.153 -0.166 -0.48 1.81 -0.203 19.9 25.1 10 -- --
39.36 0.292 9.83 -0.238 0.0762 -0.469 -0.95 -- -0.111 16.7 20.43 2 -- --
36.41 0.281 9.88 -0.459 0.153 -0.197 -- 1.72 -0.205 20.6 24.86 13 -- --
39.97 0.294 9.84 -0.259 0.16 -0.759 -- -- -0.134 20.8 19.76 17 -- --
37.7 0.286 9.87 -0.473 -- -0.137 -- 1.75 -0.202 -- 25.7 13 -- --
41.68 0.303 9.83 -0.137 0.0913 -- -0.909 -- -0.0845 16.6 -- -- -- --
43.15 0.308 9.83 -0.144 0.143 -- -- -- -0.0896 19.9 -- -- -- --
41.34 0.299 9.84 -0.249 -- -0.732 -- -- -0.129 -- 19.59 17 -- --
41.52 0.3 9.83 -- 0.154 -0.581 -- -- -0.0978 20.6 19.91 17 -- --
44.26 0.311 9.83 -0.146 -- -- -- -- -0.0915 -- -- -- -- --
43.7 0.309 9.83 -- 0.144 -- -- -- -0.0735 19.8 -- -- -- --
42.84 0.305 9.83 -- -- -0.581 -- -- -0.0953 -- 19.54 17 -- --
44.82 0.312 9.82 -- -- -- -- -- -0.0753 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.65 precipitation 0.1 43200 > th dose dependent rect. 13 5
2 31.80 precipitation 0.1 43200 > th dose dependent rect. 15 3
4 32.14 precipitation 0.1 43200 > th dose dependent rect. 15 6
5 32.19 precipitation 0.1 43200 > th dose dependent rect. 13 8
6 32.25 radiation 20.0 43200 > th dose independent rect. 10 1
7 32.25 wind 9.0 14400 > th dose dependent rect. 19 17
9 32.28 precipitation 0.1 43200 > th dose dependent rect. 20 1
12 32.45 wind 9.0 14400 > th dose independent rect. 19 16
20 32.57 wind 9.0 14400 < th dose independent rect. 19 16
32 32.73 temperature 20.0 14400 < th dose independent rect. 21 1
33 32.74 radiation 40.0 43200 < th dose independent rect. 10 1
37 32.76 wind 7.0 14400 > th dose dependent rect. 19 10
38 32.76 wind 9.0 14400 > th dose dependent rect. 16 21
40 32.78 precipitation 0.1 43200 < th dose independent rect. 16 2
41 32.78 precipitation 0.1 43200 < th dose dependent rect. 16 2
43 32.79 temperature 20.0 14400 > th dose independent rect. 21 1
45 32.80 wind 9.0 14400 < th dose independent rect. 17 19
50 32.83 radiation 40.0 43200 > th dose independent rect. 10 1
54 32.83 wind 9.0 14400 > th dose independent rect. 17 19
55 32.83 radiation 30.0 43200 < th dose dependent rect. 10 1
57 32.85 precipitation 0.1 43200 > th dose independent rect. 16 2
58 32.85 wind 9.0 43200 > th dose independent rect. 14 18
59 32.85 radiation 40.0 43200 > th dose dependent rect. 10 1
61 32.86 wind 9.0 43200 > th dose independent rect. 13 21
67 32.87 wind 9.0 43200 < th dose independent rect. 13 20
70 32.88 wind 9.0 14400 > th dose independent rect. 19 10
87 32.92 wind 9.0 43200 > th dose dependent rect. 13 19
89 32.93 wind 9.0 43200 < th dose independent rect. 3 18
96 32.94 wind 7.0 14400 > th dose independent rect. 20 8
97 32.94 wind 9.0 43200 < th dose independent rect. 24 21
110 32.96 wind 9.0 43200 > th dose dependent rect. 14 17
112 32.97 wind 9.0 43200 > th dose independent rect. 16 23
123 32.99 wind 9.0 43200 > th dose independent rect. 3 18
129 32.99 wind 9.0 43200 > th dose independent rect. 23 22
156 33.01 wind 9.0 43200 > th dose independent rect. 9 23
159 33.01 wind 9.0 43200 > th dose independent rect. 20 23
161 33.01 wind 9.0 43200 < th dose independent rect. 16 23
162 33.01 wind 9.0 43200 < th dose independent rect. 20 23
165 33.02 wind 9.0 43200 > th dose independent no NA NA
167 33.02 wind 7.0 14400 < th dose independent rect. 20 8
189 33.03 wind 9.0 43200 < th dose independent no NA NA
210 33.04 wind 9.0 43200 < th dose independent rect. 7 23
220 33.05 precipitation 0.1 43200 > th dose independent rect. 17 4
247 33.07 precipitation 0.1 43200 < th dose independent rect. 17 4
261 33.07 precipitation 0.1 43200 < th dose dependent rect. 17 4
279 33.10 wind 9.0 43200 > th dose independent sin 14 NA
293 33.11 wind 9.0 43200 < th dose independent rect. 3 15
299 33.11 wind 7.0 43200 > th dose dependent rect. 3 18
304 33.11 wind 7.0 43200 > th dose dependent rect. 23 22
324 33.12 wind 7.0 43200 > th dose dependent rect. 17 23
335 33.13 wind 9.0 14400 > th dose dependent sin 10 NA
359 33.14 wind 7.0 43200 > th dose dependent rect. 20 22
376 33.15 wind 7.0 43200 > th dose dependent no NA NA
396 33.16 wind 7.0 43200 > th dose dependent rect. 3 15
409 33.17 wind 5.0 14400 > th dose dependent rect. 21 1
416 33.18 wind 9.0 14400 > th dose independent sin 10 NA
453 33.20 wind 9.0 43200 > th dose independent rect. 2 16
456 33.20 wind 9.0 43200 > th dose independent rect. 23 19
461 33.20 wind 5.0 14400 > th dose dependent sin 10 NA
495 33.21 wind 9.0 43200 > th dose dependent sin 18 NA
522 33.23 wind 9.0 43200 < th dose independent sin 14 NA
541 33.24 wind 9.0 14400 > th dose independent rect. 19 2
582 33.25 wind 9.0 43200 > th dose dependent rect. 10 14
615 33.27 wind 9.0 43200 > th dose dependent sin 14 NA
622 33.28 wind 9.0 43200 < th dose independent sin 23 NA
624 33.28 radiation 10.0 43200 > th dose independent rect. 6 8
646 33.28 radiation 10.0 43200 < th dose dependent rect. 12 1
661 33.29 wind 9.0 43200 > th dose dependent rect. 10 11
668 33.30 wind 9.0 14400 < th dose independent sin 10 NA
670 33.30 radiation 10.0 43200 > th dose independent rect. 6 5
710 33.31 radiation 10.0 43200 > th dose dependent rect. 10 1
736 33.32 wind 7.0 43200 > th dose dependent sin 0 NA
746 33.33 radiation 10.0 43200 > th dose independent rect. 7 3
769 33.34 wind 9.0 14400 < th dose independent rect. 19 2
836 33.38 wind 9.0 43200 > th dose independent sin 22 NA
838 33.38 wind 9.0 14400 < th dose independent rect. 19 4
850 33.38 wind 9.0 43200 > th dose dependent rect. 10 8
866 33.39 wind 9.0 14400 > th dose independent rect. 17 13
914 33.41 wind 9.0 14400 > th dose dependent rect. 19 2
946 33.44 wind 9.0 43200 > th dose independent rect. 14 11
997 33.47 radiation 20.0 43200 < th dose independent rect. 10 1