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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0403300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0243) R2 : 0.00359
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0654 (0.0511) R2dN8 : 0.00463 R2N8 : 0.00359
σ : 0.457
deviance : 95.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.68 0.442 3.34 0.143 0.226 -0.609 -0.724 2.24 0.0321 4.64 49.91 4289 -- --
91.08 0.444 3.35 0.0537 0.16 0.31 -0.819 -- 0.129 4.93 43.37 9181 -- --
89.92 0.442 3.34 0.138 0.229 -0.6 -- 2.19 0.0355 5.43 50 4402 -- --
91.17 0.445 3.38 -0.0247 0.216 0.332 -- -- 0.0944 5.05 45 12214 -- --
92.66 0.448 3.34 0.126 -- -0.564 -- 2.13 0.0406 -- 49.99 4399 -- --
92.2 0.45 3.39 0.0102 0.216 -- -0.678 -- 0.0588 4.96 -- -- -- --
93.26 0.452 3.39 0.0127 0.218 -- -- -- 0.0624 5.75 -- -- -- --
92.87 0.449 3.38 0.116 -- 0.358 -- -- 0.108 -- 49.41 15608 -- --
91.08 0.444 3.38 -- 0.228 0.324 -- -- 0.096 5.67 44 12206 -- --
95.73 0.457 3.39 0.0196 -- -- -- -- 0.0676 -- -- -- -- --
93.26 0.452 3.39 -- 0.219 -- -- -- 0.061 5.74 -- -- -- --
92.8 0.449 3.37 -- -- 0.343 -- -- 0.115 -- 51 15609 -- --
95.74 0.457 3.39 -- -- -- -- -- 0.0654 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.00 temperature 25.0 90 > th dose dependent rect. 2 2
2 78.22 temperature 25.0 90 > th dose independent rect. 1 3
3 78.56 temperature 25.0 90 > th dose dependent rect. 1 4
5 79.11 temperature 25.0 270 > th dose independent rect. 1 1
11 79.31 atmosphere 1005.0 10 > th dose dependent rect. 2 3
19 80.81 radiation 1.0 43200 < th dose dependent rect. 3 1
22 81.04 atmosphere 1000.0 90 > th dose dependent rect. 2 1
26 81.27 atmosphere 1000.0 30 > th dose independent rect. 3 23
29 81.39 wind 3.0 90 < th dose independent rect. 2 1
39 81.88 wind 5.0 90 < th dose dependent rect. 2 1
68 82.30 humidity 80.0 30 > th dose dependent rect. 2 1
71 82.31 humidity 90.0 30 > th dose independent rect. 2 1
72 82.31 humidity 50.0 30 > th dose dependent rect. 2 1
77 82.32 temperature 10.0 30 > th dose independent rect. 2 1
79 82.32 temperature 30.0 30 < th dose independent rect. 2 1
80 82.32 humidity 50.0 30 > th dose independent rect. 2 1
83 82.32 atmosphere 995.0 30 > th dose independent rect. 2 1
84 82.32 atmosphere 1010.0 30 < th dose independent rect. 2 1
86 82.32 radiation 1.0 30 < th dose independent rect. 2 1
91 82.32 precipitation 0.1 30 < th dose independent rect. 2 1
92 82.32 temperature 10.0 30 > th dose independent rect. 3 23
94 82.32 radiation 1.0 30 < th dose dependent rect. 2 1
101 82.32 precipitation 0.1 30 < th dose dependent rect. 2 1
103 82.33 atmosphere 1005.0 30 > th dose independent rect. 2 1
104 82.33 atmosphere 1015.0 30 < th dose dependent rect. 2 1
113 82.37 precipitation 0.1 30 < th dose independent rect. 3 23
118 82.37 precipitation 0.1 30 < th dose dependent rect. 3 23
119 82.38 wind 9.0 1440 < th dose independent rect. 3 1
120 82.38 temperature 10.0 1440 > th dose independent rect. 3 1
123 82.38 temperature 30.0 1440 < th dose independent rect. 3 1
127 82.38 humidity 50.0 1440 > th dose independent rect. 3 1
136 82.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
137 82.38 radiation 1.0 1440 < th dose independent rect. 3 1
157 82.38 temperature 10.0 1440 > th dose independent rect. 4 23
168 82.41 wind 1.0 30 > th dose independent rect. 2 1
170 82.42 temperature 30.0 30 < th dose dependent rect. 2 1
187 82.63 wind 9.0 30 < th dose independent rect. 3 23
249 82.79 temperature 10.0 30 > th dose dependent rect. 2 3
260 83.03 atmosphere 1000.0 10 > th dose independent rect. 5 21
268 83.12 wind 5.0 30 < th dose independent rect. 2 3
274 83.25 wind 7.0 30 < th dose dependent rect. 2 3
294 83.51 precipitation 0.1 30 < th dose independent rect. 2 3
295 83.51 precipitation 0.1 30 < th dose dependent rect. 2 3
299 83.59 humidity 80.0 30 > th dose independent rect. 2 3
302 83.60 radiation 1.0 10 < th dose dependent rect. 2 12
304 83.62 wind 9.0 30 < th dose independent rect. 5 21
306 83.63 temperature 10.0 30 > th dose independent rect. 2 3
308 83.63 temperature 30.0 30 < th dose independent rect. 2 3
309 83.63 humidity 50.0 30 > th dose independent rect. 2 3
312 83.63 atmosphere 995.0 30 > th dose independent rect. 2 3
313 83.63 atmosphere 1010.0 30 < th dose independent rect. 2 3
315 83.63 radiation 1.0 30 < th dose independent rect. 2 3
320 83.63 temperature 10.0 30 > th dose independent rect. 5 21
321 83.63 radiation 10.0 30 < th dose dependent rect. 2 3
359 83.74 wind 9.0 1440 < th dose independent rect. 3 3
360 83.74 temperature 10.0 1440 > th dose independent rect. 3 3
363 83.74 temperature 30.0 1440 < th dose independent rect. 3 3
367 83.74 humidity 50.0 1440 > th dose independent rect. 3 3
376 83.74 atmosphere 995.0 1440 > th dose independent rect. 3 3
377 83.74 radiation 20.0 1440 < th dose independent rect. 3 3
386 83.74 temperature 10.0 1440 > th dose independent rect. 6 21
393 83.81 radiation 1.0 10 < th dose independent rect. 2 12
397 83.86 precipitation 0.1 30 < th dose independent rect. 5 21
398 83.86 precipitation 0.1 30 < th dose dependent rect. 5 21
401 83.90 radiation 1.0 10 < th dose dependent rect. 2 10
403 83.91 radiation 1.0 10 < th dose dependent rect. 2 6
424 84.11 radiation 1.0 10 < th dose independent rect. 2 10
428 84.12 radiation 1.0 10 < th dose independent rect. 2 6
439 84.22 humidity 50.0 30 > th dose independent rect. 3 23
441 84.26 humidity 50.0 30 > th dose dependent rect. 2 3
451 84.37 humidity 50.0 30 > th dose independent rect. 5 21
455 84.43 humidity 90.0 270 < th dose independent rect. 1 1
465 84.53 temperature 10.0 30 > th dose dependent rect. 5 21
478 84.80 atmosphere 995.0 720 > th dose independent rect. 23 16
485 85.04 temperature 10.0 720 > th dose independent rect. 15 8
486 85.04 temperature 10.0 720 > th dose independent rect. 23 16
494 85.13 humidity 90.0 270 < th dose independent rect. 1 4
508 85.25 precipitation 0.1 720 < th dose independent rect. 15 8
509 85.25 precipitation 0.1 720 < th dose dependent rect. 15 8
512 85.29 temperature 30.0 30 < th dose independent rect. 5 21
515 85.34 atmosphere 1015.0 30 < th dose independent rect. 5 21
518 85.37 temperature 10.0 720 > th dose independent rect. 3 8
519 85.37 atmosphere 995.0 720 > th dose independent rect. 3 8
520 85.37 temperature 10.0 720 > th dose independent rect. 11 16
523 85.38 radiation 10.0 30 < th dose independent rect. 16 10
525 85.39 atmosphere 1000.0 10 > th dose independent rect. 17 9
530 85.43 humidity 50.0 720 > th dose independent rect. 3 8
534 85.45 radiation 10.0 30 < th dose independent rect. 14 12
538 85.46 radiation 10.0 10 < th dose dependent rect. 16 10
543 85.49 wind 9.0 720 < th dose independent rect. 3 8
553 85.56 temperature 10.0 30 > th dose dependent rect. 3 23
558 85.60 wind 1.0 30 > th dose independent rect. 5 21
567 85.63 temperature 25.0 1440 < th dose independent rect. 1 1
570 85.64 wind 9.0 10 < th dose independent rect. 17 9
575 85.69 wind 1.0 90 > th dose independent rect. 2 3
577 85.69 radiation 10.0 10 < th dose dependent rect. 14 12
578 85.69 wind 9.0 30 < th dose dependent rect. 3 23
604 85.80 precipitation 0.1 10 < th dose independent rect. 2 15
607 85.80 precipitation 0.1 10 < th dose dependent rect. 2 15
676 85.90 temperature 10.0 10 > th dose independent rect. 17 9
680 85.90 temperature 10.0 10 > th dose independent rect. 2 15
682 85.90 atmosphere 1015.0 10 < th dose independent rect. 2 15
684 85.91 humidity 50.0 30 > th dose independent rect. 17 9
686 85.93 radiation 10.0 30 < th dose dependent rect. 5 21
691 85.95 wind 9.0 10 < th dose dependent rect. 5 21
707 86.00 precipitation 0.1 10 < th dose independent rect. 17 9
709 86.00 precipitation 0.1 10 < th dose dependent rect. 17 9
712 86.01 atmosphere 995.0 10 > th dose independent rect. 2 15
718 86.03 wind 5.0 14400 < th dose independent rect. 11 1
719 86.03 radiation 10.0 30 < th dose independent rect. 5 21
729 86.07 temperature 30.0 30 < th dose dependent rect. 2 3
731 86.08 temperature 10.0 1440 > th dose independent rect. 18 9
734 86.08 humidity 50.0 1440 > th dose independent rect. 18 9
736 86.08 radiation 20.0 1440 < th dose independent rect. 18 9
748 86.08 temperature 10.0 1440 > th dose independent rect. 3 15
769 86.13 atmosphere 995.0 30 > th dose dependent rect. 5 21
774 86.15 temperature 25.0 30 > th dose dependent rect. 17 18
815 86.23 precipitation 0.1 720 < th dose independent rect. 11 16
820 86.23 precipitation 0.1 720 < th dose dependent rect. 11 16
823 86.24 wind 9.0 30 < th dose dependent rect. 17 9
827 86.26 radiation 40.0 30 < th dose dependent rect. 14 12
830 86.27 atmosphere 995.0 720 > th dose independent rect. 15 8
867 86.31 wind 5.0 14400 < th dose independent rect. 10 5
868 86.31 humidity 50.0 30 > th dose independent rect. 2 15
871 86.31 radiation 10.0 10 < th dose dependent rect. 12 14
881 86.33 atmosphere 1015.0 30 < th dose independent rect. 3 23
891 86.36 wind 9.0 30 < th dose independent rect. 2 15
911 86.40 wind 5.0 14400 > th dose independent rect. 10 5
923 86.43 temperature 15.0 90 > th dose dependent rect. 5 6
929 86.45 precipitation 0.1 720 < th dose independent rect. 3 8
930 86.45 precipitation 0.1 720 < th dose independent rect. 23 16
934 86.45 precipitation 0.1 720 < th dose dependent rect. 3 8
936 86.45 precipitation 0.1 720 < th dose dependent rect. 23 16
940 86.47 wind 5.0 14400 > th dose independent rect. 11 1
945 86.47 temperature 25.0 10 > th dose dependent rect. 24 11
958 86.50 wind 5.0 14400 < th dose dependent rect. 11 1
971 86.53 temperature 30.0 10 < th dose independent rect. 17 9
972 86.53 atmosphere 995.0 720 > th dose independent rect. 11 16
980 86.54 temperature 25.0 10 > th dose dependent rect. 21 14