Os05g0402900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to EDGP.
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Os05g0402900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to EDGP.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 302.14 | 0.817 | 3.66 | -1.49 | 4.72 | -4.78 | -1.23 | 2.32 | -0.306 | 20 | 0.8126 | 725 | 9.92 | 20 |
| 304.31 | 0.812 | 3.64 | -1.55 | 4.75 | -4.81 | 0.375 | -- | -0.301 | 20 | 0.7489 | 731 | 9.75 | 20.1 |
| 303.16 | 0.811 | 3.68 | -1.44 | 4.6 | -4.74 | -- | 1.45 | -0.326 | 19.9 | 0.6754 | 725 | 9.88 | 20.1 |
| 304.41 | 0.813 | 3.67 | -1.52 | 4.7 | -4.79 | -- | -- | -0.317 | 20 | 0.68 | 729 | 9.77 | 20.1 |
| 359.97 | 0.888 | 3.61 | -1.86 | -- | -0.483 | -- | 0.624 | -0.626 | -- | 0.6754 | 725 | 9.88 | 20.1 |
| 369.16 | 0.901 | 3.6 | -1.91 | 0.493 | -- | -0.679 | -- | -0.55 | 23.2 | -- | -- | -- | -- |
| 370.92 | 0.902 | 3.6 | -1.88 | 0.503 | -- | -- | -- | -0.546 | 22.8 | -- | -- | -- | -- |
| 362.39 | 0.89 | 3.61 | -1.85 | -- | -0.478 | -- | -- | -0.62 | -- | 0.6754 | 725 | 9.88 | 20.1 |
| 366.32 | 0.891 | 3.66 | -- | 4.72 | -4.8 | -- | -- | -0.271 | 20 | 0.6759 | 728 | 9.97 | 20.1 |
| 386.55 | 0.919 | 3.59 | -1.87 | -- | -- | -- | -- | -0.543 | -- | -- | -- | -- | -- |
| 463.8 | 1.01 | 3.56 | -- | 0.49 | -- | -- | -- | -0.337 | 22.5 | -- | -- | -- | -- |
| 380.65 | 0.909 | 3.6 | -- | -- | -1.91 | -- | -- | -0.134 | -- | 0.05951 | 41934 | 9.22 | 19.6 |
| 478.51 | 1.02 | 3.54 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.10 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 3 | 308.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 4 | 308.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 7 | 309.41 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 17 | 309.50 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 18 | 309.67 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 9 |
| 20 | 309.97 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 27 | 311.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 28 | 311.44 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 30 | 311.49 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 33 | 311.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 34 | 311.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 36 | 311.99 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 70 | 314.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 80 | 314.24 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 91 | 314.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 106 | 315.46 | temperature | 25 | 90 | < th | dose independent | sin | 19 | NA |
| 115 | 315.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 155 | 316.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 196 | 316.60 | radiation | 10 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 225 | 316.91 | temperature | 25 | 10 | < th | dose independent | sin | 18 | NA |
| 229 | 317.00 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 232 | 317.03 | radiation | 10 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 244 | 317.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 245 | 317.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 252 | 317.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 262 | 317.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 268 | 317.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 271 | 317.48 | temperature | 25 | 90 | > th | dose independent | sin | 19 | NA |
| 318 | 317.91 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 334 | 317.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 335 | 317.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 365 | 318.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 370 | 318.28 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 402 | 319.03 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 20 |
| 407 | 319.12 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 429 | 319.44 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 464 | 320.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 509 | 320.72 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 22 |
| 558 | 321.49 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 573 | 321.79 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 583 | 322.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 588 | 322.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 644 | 322.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 679 | 323.10 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 20 |
| 690 | 323.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 699 | 323.37 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 756 | 323.85 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 7 |
| 758 | 323.86 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 16 |
| 775 | 324.06 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 776 | 324.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 802 | 324.27 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 14 |
| 824 | 324.65 | humidity | 50 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 860 | 325.09 | wind | 7 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 863 | 325.10 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 918 | 325.31 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 921 | 325.38 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 940 | 325.46 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 953 | 325.50 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 18 |
| 957 | 325.55 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 10 |
| 961 | 325.61 | temperature | 25 | 30 | > th | dose independent | rect. | 10 | 23 |
| 962 | 325.62 | wind | 9 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 968 | 325.70 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 975 | 325.81 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 990 | 325.92 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 996 | 325.97 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 1 |