Os05g0401400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0401400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 260.21 | 0.758 | 4.22 | 0.226 | 1.46 | 0.867 | -0.587 | -0.5 | -0.177 | 9.48 | 22.1 | 999 | -- | -- |
| 260.91 | 0.752 | 4.23 | 0.0959 | 1.46 | 0.89 | -0.653 | -- | -0.216 | 9.47 | 22.2 | 999 | -- | -- |
| 261.28 | 0.753 | 4.22 | 0.274 | 1.46 | 0.864 | -- | -0.729 | -0.164 | 9.43 | 22.2 | 970 | -- | -- |
| 262.75 | 0.755 | 4.24 | 0.0444 | 1.46 | 0.879 | -- | -- | -0.214 | 9.42 | 22.16 | 1000 | -- | -- |
| 374.66 | 0.902 | 4.23 | 0.36 | -- | 1.24 | -- | -0.673 | -0.0615 | -- | 21.9 | 777 | -- | -- |
| 291.55 | 0.8 | 4.3 | -0.23 | 1.59 | -- | -0.759 | -- | -0.503 | 9.67 | -- | -- | -- | -- |
| 293.68 | 0.803 | 4.3 | -0.26 | 1.59 | -- | -- | -- | -0.505 | 9.6 | -- | -- | -- | -- |
| 353.46 | 0.876 | 4.24 | 0.152 | -- | 1.42 | -- | -- | -0.00773 | -- | 25.19 | 771 | -- | -- |
| 262.8 | 0.755 | 4.24 | -- | 1.47 | 0.866 | -- | -- | -0.223 | 9.42 | 22.15 | 1000 | -- | -- |
| 443.84 | 0.984 | 4.34 | -0.273 | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
| 295.46 | 0.804 | 4.29 | -- | 1.59 | -- | -- | -- | -0.476 | 9.61 | -- | -- | -- | -- |
| 354 | 0.876 | 4.23 | -- | -- | 1.4 | -- | -- | -0.0115 | -- | 25.16 | 770 | -- | -- |
| 445.8 | 0.986 | 4.34 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.93 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 8 | 256.99 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 16 | 258.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 20 | 258.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 29 | 259.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 38 | 259.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 42 | 259.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 51 | 259.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 58 | 259.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 59 | 260.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 67 | 260.22 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 78 | 260.42 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 14 |
| 105 | 260.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 106 | 260.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 107 | 261.05 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 116 | 261.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 120 | 261.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 127 | 261.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 165 | 261.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 191 | 262.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 204 | 262.21 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 217 | 262.33 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 224 | 262.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 238 | 262.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 242 | 262.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 243 | 262.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 285 | 262.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 301 | 262.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 322 | 263.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 325 | 263.09 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 340 | 263.15 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 380 | 263.37 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 12 |
| 399 | 263.49 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 403 | 263.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 429 | 263.67 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 506 | 264.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 13 |
| 522 | 264.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 548 | 264.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 576 | 264.47 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 601 | 264.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 630 | 264.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 649 | 264.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 657 | 264.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 667 | 264.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 733 | 265.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 789 | 265.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 908 | 265.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 927 | 265.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |