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Os05g0400800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplast precursor (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (5-proFAR isomerase) (BBM II).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.14 | 0.211 | 11.4 | 0.0319 | 0.174 | -0.422 | -0.00141 | -0.75 | -0.0864 | 23.3 | 30.2 | 1887 | -- | -- |
| 20.19 | 0.209 | 11.4 | 0.124 | 0.173 | -0.49 | -0.0252 | -- | -0.0908 | 22.7 | 30.4 | 1887 | -- | -- |
| 20.13 | 0.209 | 11.4 | 0.0421 | 0.173 | -0.434 | -- | -0.677 | -0.0895 | 23.3 | 30.36 | 1886 | -- | -- |
| 20.13 | 0.209 | 11.4 | 0.14 | 0.181 | -0.535 | -- | -- | -0.0884 | 23.2 | 30.36 | 1978 | -- | -- |
| 21.98 | 0.218 | 11.4 | 0.00574 | -- | -0.384 | -- | -0.945 | -0.0838 | -- | 30.35 | 1844 | -- | -- |
| 27.72 | 0.247 | 11.4 | 0.0236 | 0.144 | -- | -0.021 | -- | -0.00924 | 0.0417 | -- | -- | -- | -- |
| 27.72 | 0.247 | 11.4 | 0.0243 | 0.144 | -- | -- | -- | -0.00919 | 0.0926 | -- | -- | -- | -- |
| 22.01 | 0.219 | 11.4 | 0.138 | -- | -0.491 | -- | -- | -0.0828 | -- | 30.4 | 1844 | -- | -- |
| 20.62 | 0.211 | 11.4 | -- | 0.18 | -0.507 | -- | -- | -0.0988 | 23.3 | 30.36 | 1978 | -- | -- |
| 29.02 | 0.252 | 11.4 | 0.0289 | -- | -- | -- | -- | -0.00711 | -- | -- | -- | -- | -- |
| 27.74 | 0.246 | 11.4 | -- | 0.144 | -- | -- | -- | -0.0119 | 0.102 | -- | -- | -- | -- |
| 22.5 | 0.221 | 11.4 | -- | -- | -0.465 | -- | -- | -0.0936 | -- | 30.37 | 1846 | -- | -- |
| 29.04 | 0.252 | 11.4 | -- | -- | -- | -- | -- | -0.0103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 20.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 7 | 20.42 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 13 | 20.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 14 | 20.66 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 15 | 20.70 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 22 | 20.73 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 25 | 20.75 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 32 | 20.77 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 33 | 20.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 71 | 20.77 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 87 | 20.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 91 | 20.78 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 95 | 20.79 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 96 | 20.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 115 | 20.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 116 | 20.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 123 | 20.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 162 | 20.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 237 | 20.85 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 283 | 20.86 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 318 | 20.87 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 19 |
| 334 | 20.88 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 389 | 20.93 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 420 | 20.96 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 23 |
| 437 | 20.99 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 539 | 21.00 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 712 | 21.04 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 849 | 21.06 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 907 | 21.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 969 | 21.12 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 995 | 21.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
