Os05g0400600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cobalt transport protein family protein.
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Os05g0400600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cobalt transport protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.17 | 0.298 | 11.1 | 3.16 | 0.733 | 102 | -0.222 | 211 | -0.196 | 19.3 | 15.05 | 4686 | -- | -- |
| 45.32 | 0.316 | 9.59 | -0.27 | 0.734 | 1.18 | -0.26 | -- | -0.267 | 19.3 | 15.05 | 4686 | -- | -- |
| 40.29 | 0.296 | 11.1 | 3.16 | 0.733 | 102 | -- | 211 | -0.196 | 19.2 | 15.05 | 4685 | -- | -- |
| 42.36 | 0.303 | 9.56 | 0.0362 | 0.745 | 0.946 | -- | -- | -0.156 | 19.3 | 18.48 | 5933 | -- | -- |
| 68.66 | 0.386 | 11.1 | 3.18 | -- | 102 | -- | 211 | -0.202 | -- | 15.05 | 4603 | -- | -- |
| 47.98 | 0.325 | 9.6 | -0.318 | 0.74 | -- | -0.37 | -- | -0.279 | 19.4 | -- | -- | -- | -- |
| 48.33 | 0.326 | 9.6 | -0.309 | 0.741 | -- | -- | -- | -0.279 | 19.3 | -- | -- | -- | -- |
| 70.85 | 0.392 | 9.55 | 0.0542 | -- | 0.952 | -- | -- | -0.171 | -- | 19.13 | 5788 | -- | -- |
| 42.23 | 0.303 | 9.57 | -- | 0.731 | 0.937 | -- | -- | -0.172 | 19.3 | 18.64 | 5909 | -- | -- |
| 77.52 | 0.411 | 9.58 | -0.322 | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
| 50.85 | 0.334 | 9.59 | -- | 0.744 | -- | -- | -- | -0.244 | 19.3 | -- | -- | -- | -- |
| 70.89 | 0.392 | 9.55 | -- | -- | 0.916 | -- | -- | -0.182 | -- | 19 | 5778 | -- | -- |
| 80.25 | 0.418 | 9.57 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 6 | 38.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 7 | 38.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 12 | 38.63 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 38 | 39.17 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 54 | 39.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 62 | 39.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 68 | 39.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 71 | 39.47 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 86 | 39.56 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 87 | 39.56 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 92 | 39.58 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 110 | 39.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 121 | 39.67 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 149 | 39.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 178 | 39.79 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 179 | 39.79 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 210 | 39.85 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 19 |
| 311 | 40.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 334 | 40.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 335 | 40.09 | radiation | 20 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 341 | 40.10 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 381 | 40.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 468 | 40.30 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 13 |
| 483 | 40.32 | radiation | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 689 | 40.60 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 691 | 40.60 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 700 | 40.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 14 |
| 703 | 40.61 | temperature | 10 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 704 | 40.62 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 720 | 40.63 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 18 |
| 731 | 40.64 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 16 |
| 741 | 40.64 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 765 | 40.65 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 772 | 40.66 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 796 | 40.67 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 808 | 40.67 | temperature | 15 | 4320 | < th | dose dependent | rect. | 9 | 22 |
| 859 | 40.69 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 17 |
| 904 | 40.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 923 | 40.72 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 14 |
| 925 | 40.72 | temperature | 15 | 4320 | < th | dose dependent | sin | 11 | NA |
| 938 | 40.73 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 978 | 40.76 | temperature | 20 | 270 | < th | dose independent | sin | 16 | NA |