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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0400500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0533) R2 : 0.74
β1 : -3.67 (0.249) R2dD : 0.231 R2D : 0.429
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.5 (0.148) R2dE : 0.184 R2E : 0.298
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.2 (0.53) R2dD*E : 0.0666 R2D*E : 0.25
γ1 : -0.325 (0.12) R2dN8 : 0.00703 R2N8 : 0.0137
σ : 0.947
deviance : 413.49
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.03
memory length : 1462
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.36
open length of G : 1.22

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
385.42 0.922 4.12 -3.62 0.591 -2.04 -2.35 3.54 -0.267 17.3 20 1444 5.35 1.25
443.35 0.981 4.25 -4.91 0.465 -2.12 -2.62 -- -0.576 16.8 20.03 1448 5.6 1.02
398.94 0.93 4.13 -3.59 0.563 -2.09 -- 3.73 -0.275 17.4 20.01 1446 5.35 1.23
459.06 0.998 4.25 -4.94 0.576 -2.14 -- -- -0.599 17 20.03 1446 5.62 0.966
413.49 0.947 4.13 -3.67 -- -2.5 -- 4.2 -0.325 -- 20.03 1462 5.36 1.22
683.27 1.23 4.39 -5.61 0.67 -- -2.69 -- -1.19 17.2 -- -- -- --
701.41 1.24 4.39 -5.6 0.653 -- -- -- -1.21 17.3 -- -- -- --
473.2 1.01 4.24 -4.91 -- -2.5 -- -- -0.61 -- 20.04 1457 5.67 0.917
1005.4 1.48 4.16 -- 0.613 -2.5 -- -- -0.481 16.9 20 6344 5.71 1.03
723.66 1.26 4.38 -5.63 -- -- -- -- -1.22 -- -- -- -- --
1529.31 1.83 4.25 -- 0.751 -- -- -- -0.583 17 -- -- -- --
527.87 1.07 4 -- -- -5.39 -- -- 0.498 -- 18.57 47520 5.75 5.22
1558.96 1.84 4.24 -- -- -- -- -- -0.599 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 399.75 temperature 20 1440 > th dose independent rect. 5 2
2 401.26 temperature 20 1440 < th dose independent rect. 5 1
6 415.19 temperature 20 1440 < th dose independent rect. 23 1
7 415.64 temperature 20 1440 < th dose independent rect. 22 9
9 417.66 temperature 20 1440 < th dose independent rect. 22 3
10 417.83 temperature 20 1440 > th dose independent rect. 22 9
20 420.16 temperature 20 1440 > th dose independent rect. 23 1
23 421.09 temperature 20 1440 > th dose independent rect. 22 3
24 421.12 temperature 20 1440 < th dose independent rect. 3 4
28 421.98 temperature 20 1440 < th dose independent rect. 1 6
36 423.54 temperature 20 1440 > th dose independent rect. 3 4
40 424.15 temperature 20 1440 > th dose independent rect. 1 6
88 431.46 atmosphere 1015 43200 < th dose independent rect. 18 2
121 435.79 atmosphere 1015 43200 > th dose dependent rect. 12 10
125 436.33 atmosphere 1015 43200 > th dose dependent rect. 16 6
129 436.51 atmosphere 1015 43200 > th dose dependent rect. 20 1
130 436.51 atmosphere 1015 43200 > th dose dependent rect. 13 2
133 436.55 atmosphere 1015 43200 > th dose dependent rect. 12 7
155 438.19 atmosphere 1015 43200 > th dose independent rect. 14 7
159 438.88 atmosphere 1015 43200 < th dose independent rect. 14 6
200 442.23 radiation 40 14400 < th dose independent rect. 4 4
218 442.99 radiation 40 14400 < th dose independent rect. 17 15
220 443.04 radiation 40 14400 < th dose independent rect. 6 2
223 443.09 temperature 20 1440 > th dose independent sin 10 NA
224 443.12 temperature 20 1440 < th dose independent sin 10 NA
225 443.12 radiation 40 14400 < th dose independent rect. 19 13
229 443.21 atmosphere 1015 43200 > th dose independent rect. 14 1
232 443.28 radiation 40 14400 < th dose independent rect. 21 11
233 443.30 atmosphere 1015 43200 > th dose independent rect. 19 1
304 447.73 atmosphere 1015 43200 > th dose dependent sin 17 NA
332 448.93 temperature 20 1440 > th dose independent rect. 3 1
333 448.93 humidity 90 43200 > th dose dependent rect. 13 1
335 449.02 temperature 20 1440 < th dose independent rect. 3 1
413 452.42 radiation 30 14400 > th dose dependent rect. 7 1
542 455.90 temperature 20 1440 > th dose dependent rect. 7 1
551 456.22 temperature 25 1440 < th dose dependent rect. 24 1
560 456.52 temperature 20 1440 < th dose dependent rect. 2 1
574 456.81 radiation 10 1440 < th dose independent rect. 16 1
610 457.87 temperature 20 1440 < th dose dependent rect. 24 4
625 458.34 radiation 10 1440 < th dose independent sin 15 NA
646 458.81 radiation 30 14400 > th dose independent rect. 7 1
695 459.64 temperature 15 1440 > th dose dependent rect. 2 1
850 463.36 temperature 15 43200 > th dose independent rect. 1 1
851 463.36 humidity 90 43200 > th dose dependent rect. 12 3
928 464.64 temperature 15 43200 > th dose independent rect. 24 4
939 464.88 temperature 15 43200 > th dose independent rect. 3 1
951 465.05 humidity 60 43200 < th dose dependent rect. 19 14
953 465.09 temperature 15 43200 < th dose independent rect. 1 1