Os05g0399800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os05g0399800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 286.08 | 0.795 | 3.35 | 1.63 | 0.0131 | -0.962 | 1.08 | -1.07 | 1.31 | 20.4 | 25.9 | 1443 | -- | -- |
| 287.04 | 0.789 | 3.32 | 1.95 | 0.00587 | -1 | 0.959 | -- | 1.4 | 20.6 | 26.03 | 1423 | -- | -- |
| 289.69 | 0.793 | 3.35 | 1.63 | 0.0139 | -0.961 | -- | -0.996 | 1.31 | 20.2 | 26.05 | 1452 | -- | -- |
| 290.46 | 0.794 | 3.32 | 1.93 | 0.0132 | -1.03 | -- | -- | 1.41 | 20.6 | 26.01 | 1429 | -- | -- |
| 289.7 | 0.793 | 3.35 | 1.63 | -- | -0.962 | -- | -0.975 | 1.31 | -- | 26.04 | 1448 | -- | -- |
| 322.18 | 0.841 | 3.39 | 1.59 | 0.0122 | -- | 1.11 | -- | 1.08 | 19.8 | -- | -- | -- | -- |
| 325.36 | 0.845 | 3.39 | 1.56 | 0.0832 | -- | -- | -- | 1.08 | 14.7 | -- | -- | -- | -- |
| 290.47 | 0.794 | 3.31 | 1.93 | -- | -1.03 | -- | -- | 1.41 | -- | 26.01 | 1423 | -- | -- |
| 378.63 | 0.906 | 3.39 | -- | 0.00163 | -0.572 | -- | -- | 1.09 | 10.6 | 25.4 | 1420 | -- | -- |
| 325.77 | 0.843 | 3.39 | 1.56 | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
| 389.48 | 0.923 | 3.43 | -- | 0.0528 | -- | -- | -- | 0.907 | 14.4 | -- | -- | -- | -- |
| 378.57 | 0.906 | 3.41 | -- | -- | -0.476 | -- | -- | 0.974 | -- | 28.4 | 1336 | -- | -- |
| 389.64 | 0.921 | 3.43 | -- | -- | -- | -- | -- | 0.906 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 7 | 280.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 17 | 280.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 48 | 281.33 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 50 | 281.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 81 | 282.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 83 | 282.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 115 | 282.82 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 134 | 283.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 139 | 283.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 194 | 283.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 301 | 285.01 | humidity | 90 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 309 | 285.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 339 | 285.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 415 | 285.88 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 494 | 286.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 518 | 286.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 523 | 286.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 562 | 286.81 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 565 | 286.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 625 | 287.07 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 658 | 287.21 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 683 | 287.30 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 818 | 287.76 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 852 | 287.87 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 895 | 287.96 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 896 | 287.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 904 | 287.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 12 |