Os05g0399300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seed chitinase-c.
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Os05g0399300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seed chitinase-c.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.69 | 0.485 | 6.26 | 0.897 | 0.355 | 1.82 | 0.828 | -0.781 | -0.211 | 9.22 | 25.1 | 781 | -- | -- |
| 107.68 | 0.483 | 6.27 | 0.848 | 0.346 | 1.94 | 0.804 | -- | -0.217 | 8.77 | 25.13 | 816 | -- | -- |
| 108.57 | 0.485 | 6.27 | 0.868 | 0.352 | 1.88 | -- | -0.303 | -0.215 | 9.83 | 25.05 | 778 | -- | -- |
| 108.59 | 0.485 | 6.28 | 0.779 | 0.352 | 1.86 | -- | -- | -0.247 | 10.2 | 25 | 736 | -- | -- |
| 114.45 | 0.498 | 6.27 | 0.889 | -- | 2.02 | -- | -0.308 | -0.173 | -- | 25.83 | 760 | -- | -- |
| 159.61 | 0.592 | 6.36 | 0.238 | 0.624 | -- | 0.44 | -- | -0.635 | 10 | -- | -- | -- | -- |
| 160.32 | 0.593 | 6.36 | 0.256 | 0.62 | -- | -- | -- | -0.634 | 10.2 | -- | -- | -- | -- |
| 114.57 | 0.499 | 6.28 | 0.832 | -- | 2.05 | -- | -- | -0.185 | -- | 25.8 | 757 | -- | -- |
| 122.55 | 0.516 | 6.32 | -- | 0.434 | 1.53 | -- | -- | -0.411 | 10.5 | 24.9 | 602 | -- | -- |
| 183.66 | 0.633 | 6.38 | 0.247 | -- | -- | -- | -- | -0.635 | -- | -- | -- | -- | -- |
| 162.05 | 0.595 | 6.37 | -- | 0.619 | -- | -- | -- | -0.662 | 10.2 | -- | -- | -- | -- |
| 130.67 | 0.532 | 6.31 | -- | -- | 1.71 | -- | -- | -0.341 | -- | 25.8 | 736 | -- | -- |
| 185.27 | 0.635 | 6.38 | -- | -- | -- | -- | -- | -0.662 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 103.02 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 7 | 103.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 11 | 103.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 16 | 103.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 29 | 104.28 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 46 | 104.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 63 | 104.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 81 | 104.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 372 | 106.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 410 | 106.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 455 | 106.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 552 | 107.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 605 | 107.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 633 | 107.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 655 | 107.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 748 | 108.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 825 | 108.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 873 | 108.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 902 | 108.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 907 | 108.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 909 | 108.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 910 | 108.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 969 | 109.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 995 | 109.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 998 | 109.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |