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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0398800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.79 (0.0897) R2 : 0.55
β1 : -7.36 (0.353) R2dD : 0.522 R2D : 0.174
β2 : 1.4 (0.231) R2dC : 0.0375 R2C : 0.00144
β3 : 2.43 (0.505) R2dE : 0.0255 R2E : 0.0044
β4 : -4.54 (1.05) R2dD*C : 0.02 R2D*C : -0.0441
β5 : 15.8 (1.51) R2dD*E : 0.137 R2D*E : -0.135
γ1 : -2.21 (0.198) R2dN8 : 0.179 R2N8 : 0.0502
σ : 1.68
deviance : 1277.32
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_____
C
peak time of C : 4.36
E
wheather : humidity
threshold : 91
memory length : 704
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 14.8
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1277.32 1.68 5.79 -7.36 1.4 2.43 -4.54 15.8 -2.21 4.36 91 704 14.8 --
1385.04 1.73 5.86 -5.38 1.37 2.93 -3.04 -- -2.43 6.11 67 1113 15.4 --
1318.74 1.69 5.79 -7.27 1.51 2.36 -- 15.5 -2.2 3.79 91 685 15.4 --
1398.53 1.74 5.86 -5.46 1.36 2.87 -- -- -2.43 5.69 66.99 1113 15.2 --
1429.55 1.76 5.77 -7.16 -- 2.88 -- 14.6 -2.07 -- 91.08 685 14.8 --
1620.6 1.89 5.83 -5.91 1.56 -- -1.61 -- -2.21 4.33 -- -- -- --
1627.27 1.89 5.82 -5.9 1.54 -- -- -- -2.2 4.11 -- -- -- --
1397.02 1.74 5.9 -5.34 -- 4.07 -- -- -2.45 -- 66 1071 12.1 --
2156.86 2.16 5.74 -- 1.46 3.42 -- -- -1.87 6.06 66 1137 16.3 --
1756.4 1.96 5.83 -5.84 -- -- -- -- -2.16 -- -- -- -- --
2544.17 2.36 5.68 -- 1.43 -- -- -- -1.54 4.18 -- -- -- --
2180.08 2.17 5.79 -- -- 4.45 -- -- -1.92 -- 66 1091 12.9 --
2654.75 2.4 5.68 -- -- -- -- -- -1.51 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1170.79 wind 1.0 43200 < th dose independent rect. 20 10
2 1173.37 wind 1.0 43200 < th dose independent rect. 18 12
4 1178.16 wind 5.0 43200 < th dose dependent rect. 1 3
12 1187.78 wind 1.0 43200 > th dose dependent rect. 24 4
18 1191.46 wind 1.0 43200 > th dose independent rect. 20 10
19 1192.37 temperature 20.0 43200 > th dose independent rect. 11 9
21 1193.03 temperature 20.0 43200 < th dose independent rect. 12 8
24 1193.51 temperature 20.0 43200 < th dose independent rect. 11 10
32 1195.07 temperature 20.0 43200 < th dose independent rect. 7 14
33 1195.11 humidity 90.0 14400 < th dose independent rect. 12 2
50 1196.41 wind 1.0 43200 > th dose independent rect. 18 12
70 1199.39 wind 9.0 43200 > th dose independent rect. 10 1
75 1199.96 humidity 80.0 43200 > th dose independent rect. 2 13
78 1200.54 humidity 80.0 43200 > th dose independent rect. 1 15
91 1200.99 temperature 20.0 43200 < th dose dependent rect. 20 2
94 1201.43 wind 1.0 43200 > th dose independent rect. 22 8
107 1202.98 temperature 20.0 43200 < th dose independent rect. 15 2
108 1203.18 wind 1.0 43200 < th dose dependent rect. 22 9
111 1203.33 wind 9.0 43200 < th dose independent rect. 10 1
113 1203.63 temperature 20.0 43200 < th dose independent rect. 7 1
116 1203.97 precipitation 0.1 43200 < th dose independent rect. 13 1
117 1203.97 precipitation 0.1 43200 < th dose dependent rect. 13 1
125 1204.41 temperature 20.0 43200 < th dose independent rect. 7 10
133 1205.38 precipitation 0.1 43200 > th dose independent rect. 13 1
143 1206.39 humidity 80.0 43200 < th dose independent rect. 2 13
157 1207.19 humidity 80.0 43200 > th dose independent rect. 24 17
160 1207.29 humidity 80.0 43200 < th dose independent rect. 1 15
161 1207.37 temperature 20.0 43200 > th dose independent rect. 18 1
164 1207.52 temperature 20.0 43200 > th dose independent rect. 7 1
170 1207.90 humidity 80.0 43200 > th dose independent rect. 3 11
178 1208.55 wind 7.0 43200 > th dose dependent rect. 10 1
191 1209.88 temperature 20.0 43200 < th dose dependent rect. 7 1
236 1213.07 temperature 25.0 43200 < th dose dependent rect. 11 4
247 1213.48 wind 1.0 43200 < th dose dependent rect. 2 3
257 1213.96 temperature 25.0 43200 < th dose dependent rect. 12 1
268 1214.52 wind 1.0 43200 < th dose dependent rect. 18 13
272 1214.64 temperature 25.0 43200 < th dose dependent rect. 14 1
276 1214.74 temperature 20.0 43200 < th dose independent sin 21 NA
283 1215.17 wind 7.0 43200 > th dose dependent rect. 5 8
296 1215.81 radiation 1.0 43200 < th dose independent rect. 9 4
301 1215.96 radiation 1.0 43200 > th dose independent rect. 9 4
308 1216.52 temperature 20.0 43200 > th dose independent sin 21 NA
340 1218.03 wind 3.0 43200 < th dose independent rect. 24 5
344 1218.11 wind 3.0 43200 < th dose independent rect. 2 2
348 1218.21 radiation 1.0 43200 < th dose independent rect. 8 6
349 1218.26 radiation 1.0 43200 > th dose independent rect. 8 6
350 1218.30 radiation 1.0 43200 < th dose dependent rect. 8 7
355 1218.58 wind 7.0 43200 > th dose dependent rect. 7 6
356 1218.59 wind 3.0 43200 > th dose independent rect. 2 3
371 1219.14 wind 9.0 43200 > th dose independent rect. 9 3
396 1220.03 precipitation 0.1 43200 > th dose dependent rect. 13 1
402 1220.55 wind 9.0 43200 < th dose independent rect. 9 3
406 1220.73 temperature 20.0 43200 < th dose dependent rect. 7 17
409 1220.83 wind 3.0 43200 > th dose dependent rect. 5 1
412 1220.95 wind 9.0 43200 < th dose independent rect. 24 13
416 1221.17 radiation 1.0 43200 < th dose dependent rect. 9 4
439 1221.87 humidity 70.0 43200 > th dose dependent rect. 19 21
446 1222.10 wind 9.0 43200 < th dose independent rect. 3 10
464 1222.79 humidity 80.0 43200 > th dose independent sin 3 NA
465 1222.82 wind 9.0 43200 < th dose independent rect. 7 6
488 1223.56 humidity 80.0 43200 < th dose independent rect. 3 11
505 1223.89 wind 1.0 43200 < th dose dependent rect. 20 11
516 1224.22 wind 7.0 43200 > th dose dependent rect. 24 13
525 1224.41 precipitation 0.1 14400 > th dose independent rect. 9 5
538 1225.12 humidity 70.0 43200 > th dose dependent rect. 7 22
552 1225.66 wind 1.0 43200 < th dose dependent rect. 1 6
562 1225.86 temperature 20.0 43200 < th dose dependent sin 19 NA
571 1226.08 humidity 70.0 43200 > th dose dependent rect. 14 22
575 1226.24 temperature 20.0 43200 > th dose independent rect. 12 2
585 1226.57 temperature 20.0 43200 < th dose independent rect. 12 2
605 1227.49 precipitation 0.1 14400 < th dose independent rect. 9 5
606 1227.49 precipitation 0.1 14400 < th dose dependent rect. 9 5
613 1227.66 humidity 80.0 43200 < th dose independent sin 3 NA
681 1229.85 humidity 80.0 43200 > th dose dependent rect. 12 1
693 1230.34 wind 1.0 43200 < th dose dependent rect. 16 2
708 1230.76 wind 3.0 43200 > th dose independent rect. 24 9
716 1231.02 radiation 40.0 43200 < th dose independent rect. 24 8
721 1231.14 radiation 40.0 43200 < th dose independent rect. 3 5
723 1231.25 humidity 70.0 43200 > th dose dependent rect. 13 15
760 1232.35 humidity 80.0 43200 > th dose independent rect. 23 22
788 1233.01 radiation 40.0 43200 < th dose independent rect. 7 1
796 1233.24 radiation 40.0 43200 < th dose independent rect. 16 16
842 1234.55 wind 3.0 14400 > th dose independent rect. 14 1
861 1234.95 radiation 40.0 43200 < th dose independent rect. 20 12
875 1235.25 wind 9.0 43200 > th dose independent rect. 8 5
903 1235.87 wind 3.0 43200 < th dose independent rect. 24 9
941 1237.02 wind 7.0 43200 > th dose independent rect. 5 7
953 1237.25 wind 7.0 43200 > th dose independent rect. 4 9
956 1237.29 wind 1.0 43200 > th dose independent rect. 14 8
957 1237.35 humidity 70.0 43200 > th dose dependent sin 16 NA
962 1237.43 humidity 70.0 43200 > th dose dependent no NA NA
985 1237.96 precipitation 0.1 14400 > th dose dependent rect. 6 9
991 1238.09 wind 1.0 43200 > th dose independent rect. 17 1
997 1238.23 wind 9.0 43200 > th dose independent rect. 2 11