Os05g0397800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0397800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.48 | 0.419 | 9.44 | -0.314 | 1.86 | -0.517 | 0.581 | 1.63 | -0.17 | 8.18 | 7.149 | 1369 | -- | -- |
| 83.58 | 0.426 | 9.42 | -0.212 | 1.82 | -0.566 | 0.878 | -- | -0.128 | 8.13 | 4.268 | 1409 | -- | -- |
| 80.07 | 0.417 | 9.43 | -0.314 | 1.93 | -0.508 | -- | 2.07 | -0.178 | 8.2 | 13.55 | 1259 | -- | -- |
| 85.67 | 0.431 | 9.43 | -0.167 | 1.83 | -0.517 | -- | -- | -0.141 | 8.14 | 4.866 | 1404 | -- | -- |
| 115.81 | 0.501 | 9.43 | 0.0392 | -- | 2.41 | -- | 0.909 | 0.0743 | -- | 0.1093 | 981 | -- | -- |
| 88.28 | 0.44 | 9.4 | -0.0804 | 1.8 | -- | 0.78 | -- | -0.0313 | 8.06 | -- | -- | -- | -- |
| 90.1 | 0.445 | 9.4 | -0.0588 | 1.8 | -- | -- | -- | -0.0321 | 8.04 | -- | -- | -- | -- |
| 119.46 | 0.509 | 9.42 | 0.266 | -- | 2.53 | -- | -- | 0.11 | -- | 0.14 | 977 | -- | -- |
| 85.95 | 0.432 | 9.42 | -- | 1.83 | -0.438 | -- | -- | -0.099 | 8.14 | 6.42 | 1399 | -- | -- |
| 267.41 | 0.764 | 9.45 | -0.0419 | -- | -- | -- | -- | -0.00957 | -- | -- | -- | -- | -- |
| 90.19 | 0.444 | 9.4 | -- | 1.8 | -- | -- | -- | -0.0256 | 8.04 | -- | -- | -- | -- |
| 121.28 | 0.513 | 9.43 | -- | -- | 2.5 | -- | -- | 0.0834 | -- | 0.2083 | 977 | -- | -- |
| 267.46 | 0.763 | 9.45 | -- | -- | -- | -- | -- | -0.00492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.68 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 2 | 78.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 3 | 78.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 6 | 78.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 15 | 78.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 36 | 78.78 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 46 | 78.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 3 |
| 72 | 79.31 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 75 | 79.32 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 80 | 79.34 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 87 | 79.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 109 | 79.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 121 | 79.60 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 125 | 79.61 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 18 |
| 165 | 79.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 171 | 79.72 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 21 |
| 226 | 80.04 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 229 | 80.05 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 11 |
| 231 | 80.07 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 285 | 80.17 | temperature | 30 | 90 | < th | dose independent | rect. | 10 | 12 |
| 300 | 80.23 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 307 | 80.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 309 | 80.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 330 | 80.35 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 338 | 80.37 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 4 |
| 378 | 80.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 385 | 80.47 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 401 | 80.48 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 418 | 80.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 469 | 80.60 | temperature | 30 | 90 | < th | dose independent | sin | 0 | NA |
| 488 | 80.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 501 | 80.66 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 505 | 80.67 | humidity | 90 | 720 | > th | dose dependent | sin | 21 | NA |
| 507 | 80.68 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 510 | 80.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 521 | 80.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 528 | 80.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 538 | 80.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 546 | 80.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 560 | 80.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 566 | 80.71 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 601 | 80.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 607 | 80.74 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 11 | 11 |
| 642 | 80.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 12 |
| 666 | 80.83 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 716 | 80.89 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 794 | 80.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 22 | 21 |
| 797 | 81.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 806 | 81.02 | temperature | 30 | 90 | > th | dose independent | sin | 0 | NA |
| 820 | 81.02 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 23 |
| 833 | 81.03 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 23 |
| 846 | 81.04 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 847 | 81.04 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 862 | 81.06 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 863 | 81.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 864 | 81.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 953 | 81.12 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |