Os05g0397700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SecY protein family protein.
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Os05g0397700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SecY protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.68 | 0.281 | 10.8 | -0.246 | 0.471 | -0.268 | -0.488 | -1.17 | -0.0132 | 18.6 | 30.1 | 4223 | -- | -- |
| 35.87 | 0.279 | 10.8 | -0.0767 | 0.473 | -0.368 | -0.535 | -- | 0.00535 | 18.4 | 29.81 | 4184 | -- | -- |
| 35.93 | 0.279 | 10.8 | -0.279 | 0.496 | -0.241 | -- | -1.27 | -0.0148 | 18.4 | 29.81 | 4927 | -- | -- |
| 36.11 | 0.28 | 10.8 | -0.0418 | 0.501 | -0.388 | -- | -- | -0.00224 | 18.4 | 29.83 | 4916 | -- | -- |
| 47.72 | 0.322 | 10.8 | -0.246 | -- | -0.258 | -- | -1.27 | -0.0227 | -- | 30.4 | 4223 | -- | -- |
| 41.45 | 0.302 | 10.8 | -0.152 | 0.484 | -- | -0.422 | -- | 0.0557 | 18.4 | -- | -- | -- | -- |
| 41.86 | 0.303 | 10.8 | -0.146 | 0.483 | -- | -- | -- | 0.0546 | 18.2 | -- | -- | -- | -- |
| 47.8 | 0.322 | 10.8 | -0.013 | -- | -0.356 | -- | -- | 0.0402 | -- | 29.6 | 5696 | -- | -- |
| 36.15 | 0.28 | 10.8 | -- | 0.504 | -0.393 | -- | -- | -0.000898 | 18.4 | 29.8 | 4926 | -- | -- |
| 53.97 | 0.343 | 10.8 | -0.16 | -- | -- | -- | -- | 0.0439 | -- | -- | -- | -- | -- |
| 42.42 | 0.305 | 10.8 | -- | 0.485 | -- | -- | -- | 0.0709 | 18.2 | -- | -- | -- | -- |
| 47.82 | 0.322 | 10.8 | -- | -- | -0.355 | -- | -- | 0.0356 | -- | 29.6 | 5696 | -- | -- |
| 54.64 | 0.345 | 10.8 | -- | -- | -- | -- | -- | 0.0616 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.65 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 14 |
| 3 | 33.93 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 15 | 34.65 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 19 | 34.77 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 22 | 34.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 41 | 35.20 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 47 | 35.26 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 62 | 35.27 | temperature | 25.0 | 30 | > th | dose independent | rect. | 19 | 14 |
| 70 | 35.30 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 72 | 35.30 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 76 | 35.31 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 81 | 35.33 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 121 | 35.37 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 157 | 35.41 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 179 | 35.45 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 181 | 35.45 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 187 | 35.48 | temperature | 30.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 198 | 35.50 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 214 | 35.51 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 227 | 35.54 | temperature | 30.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 250 | 35.56 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 263 | 35.59 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 270 | 35.60 | temperature | 25.0 | 30 | > th | dose independent | rect. | 2 | 7 |
| 325 | 35.64 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 420 | 35.69 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 472 | 35.70 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 543 | 35.74 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 640 | 35.74 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 652 | 35.75 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 697 | 35.77 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 775 | 35.77 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 803 | 35.78 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 849 | 35.80 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 851 | 35.80 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 9 |
| 946 | 35.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 8 |