Os05g0397600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os05g0397600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.99 | 0.376 | 7.17 | 0.677 | 0.446 | -2.62 | 0.028 | 0.306 | 0.429 | 1.74 | 21.55 | 73 | -- | -- |
| 64.03 | 0.373 | 7.18 | 0.621 | 0.447 | -2.61 | -0.0454 | -- | 0.413 | 1.79 | 21.54 | 69 | -- | -- |
| 63.97 | 0.373 | 7.17 | 0.669 | 0.444 | -2.63 | -- | 0.272 | 0.428 | 1.8 | 21.55 | 69 | -- | -- |
| 64.03 | 0.373 | 7.18 | 0.622 | 0.448 | -2.61 | -- | -- | 0.413 | 1.81 | 21.54 | 69 | -- | -- |
| 71.63 | 0.394 | 7.15 | 0.808 | -- | -3.06 | -- | 0.525 | 0.513 | -- | 21.43 | 55 | -- | -- |
| 175.04 | 0.62 | 7.27 | 0.0754 | 1.45 | -- | 0.676 | -- | -0.0211 | 2.75 | -- | -- | -- | -- |
| 176.62 | 0.622 | 7.27 | 0.0591 | 1.45 | -- | -- | -- | -0.025 | 2.73 | -- | -- | -- | -- |
| 71.86 | 0.395 | 7.16 | 0.72 | -- | -3.04 | -- | -- | 0.489 | -- | 21.36 | 53 | -- | -- |
| 73.39 | 0.399 | 7.2 | -- | 0.528 | -2.4 | -- | -- | 0.317 | 1.96 | 21.85 | 69 | -- | -- |
| 298.33 | 0.807 | 7.27 | 0.121 | -- | -- | -- | -- | 0.0118 | -- | -- | -- | -- | -- |
| 176.71 | 0.622 | 7.28 | -- | 1.45 | -- | -- | -- | -0.0316 | 2.73 | -- | -- | -- | -- |
| 84.74 | 0.429 | 7.18 | -- | -- | -2.87 | -- | -- | 0.378 | -- | 21.84 | 54 | -- | -- |
| 298.71 | 0.807 | 7.27 | -- | -- | -- | -- | -- | -0.00161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.43 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 2 | 66.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 4 | 67.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 8 | 68.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 10 | 68.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 64 | 75.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 91 | 76.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 99 | 76.83 | temperature | 20 | 90 | > th | dose dependent | sin | 21 | NA |
| 104 | 77.08 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 113 | 77.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 114 | 77.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 154 | 78.91 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 156 | 78.98 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 157 | 79.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 161 | 79.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 168 | 79.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 175 | 79.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 180 | 79.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 190 | 79.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 212 | 80.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 219 | 80.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 249 | 80.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 266 | 81.04 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 267 | 81.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 291 | 81.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 318 | 81.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 352 | 82.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 15 |
| 364 | 82.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 406 | 82.85 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 468 | 83.40 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 473 | 83.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 501 | 83.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 511 | 83.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 574 | 84.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 603 | 84.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 699 | 85.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 892 | 86.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |