Os05g0397300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0397300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.42 | 0.65 | 12.1 | 0.761 | 2.54 | 4.6 | -1.83 | -0.984 | 0.148 | 21.5 | 1.61 | 701 | -- | -- |
| 192.6 | 0.646 | 12.1 | 0.727 | 2.5 | 4.55 | -1.64 | -- | 0.145 | 21.5 | 1.64 | 695 | -- | -- |
| 201.52 | 0.661 | 12.1 | 0.77 | 2.47 | 4.66 | -- | -0.189 | 0.115 | 21.2 | 1.584 | 678 | -- | -- |
| 200.93 | 0.66 | 12.1 | 0.796 | 2.45 | 4.66 | -- | -- | 0.151 | 20.9 | 1.589 | 668 | -- | -- |
| 252.63 | 0.74 | 12 | 1.16 | -- | 3.06 | -- | 1.23 | 0.233 | -- | 2.225 | 402 | -- | -- |
| 248.49 | 0.739 | 12.1 | 0.531 | 3.21 | -- | -1.31 | -- | -0.0768 | 2.72 | -- | -- | -- | -- |
| 254.39 | 0.747 | 12.1 | 0.563 | 3.21 | -- | -- | -- | -0.0693 | 2.75 | -- | -- | -- | -- |
| 222.38 | 0.695 | 12 | 0.686 | -- | 2.92 | -- | -- | 0.0821 | -- | 2.17 | 387 | -- | -- |
| 217.36 | 0.687 | 12.1 | -- | 2.42 | 4.61 | -- | -- | 0.0661 | 21.1 | 1.607 | 667 | -- | -- |
| 851.59 | 1.36 | 12 | 0.699 | -- | -- | -- | -- | 0.0123 | -- | -- | -- | -- | -- |
| 262.74 | 0.758 | 12.1 | -- | 3.22 | -- | -- | -- | -0.132 | 2.75 | -- | -- | -- | -- |
| 234.87 | 0.714 | 12 | -- | -- | 2.95 | -- | -- | 0.00356 | -- | 2.44 | 394 | -- | -- |
| 864.5 | 1.37 | 12.1 | -- | -- | -- | -- | -- | -0.0653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 2 | 179.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 15 | 183.75 | temperature | 15 | 30 | > th | dose dependent | sin | 16 | NA |
| 18 | 183.92 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 13 |
| 30 | 184.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 31 | 184.63 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 41 | 185.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 3 |
| 57 | 185.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 12 |
| 73 | 186.47 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 76 | 186.57 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 19 |
| 77 | 186.59 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 19 |
| 89 | 187.19 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 21 |
| 101 | 187.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 103 | 187.69 | temperature | 30 | 30 | < th | dose dependent | sin | 16 | NA |
| 147 | 189.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 11 |
| 172 | 189.62 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 178 | 189.82 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 182 | 190.03 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 189 | 190.28 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 6 |
| 190 | 190.30 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 17 |
| 200 | 190.57 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 8 |
| 205 | 190.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 210 | 190.83 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 4 |
| 212 | 190.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 216 | 190.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 221 | 191.00 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 17 |
| 223 | 191.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 231 | 191.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 232 | 191.09 | temperature | 25 | 90 | < th | dose independent | sin | 16 | NA |
| 247 | 191.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 256 | 191.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 258 | 191.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 280 | 191.93 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 295 | 192.23 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 20 |
| 317 | 192.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 323 | 192.51 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 343 | 192.82 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 346 | 192.88 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 21 |
| 369 | 193.17 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 374 | 193.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 378 | 193.28 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 387 | 193.38 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 12 |
| 406 | 193.55 | temperature | 20 | 720 | > th | dose dependent | sin | 21 | NA |
| 427 | 193.89 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 429 | 193.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 468 | 194.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 513 | 194.75 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 531 | 194.95 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 540 | 195.04 | temperature | 25 | 90 | > th | dose independent | sin | 16 | NA |
| 547 | 195.09 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 550 | 195.11 | temperature | 25 | 270 | > th | dose independent | sin | 18 | NA |
| 569 | 195.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 579 | 195.29 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 598 | 195.43 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 15 |
| 611 | 195.50 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 656 | 195.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 717 | 196.34 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 21 |
| 720 | 196.36 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 722 | 196.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 733 | 196.50 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 13 |
| 820 | 197.03 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 19 |
| 823 | 197.05 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 847 | 197.18 | humidity | 90 | 90 | < th | dose dependent | rect. | 6 | 12 |
| 860 | 197.25 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 877 | 197.35 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 883 | 197.38 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 23 |
| 887 | 197.40 | radiation | 1 | 720 | > th | dose dependent | sin | 13 | NA |
| 892 | 197.43 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 21 |
| 906 | 197.50 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 910 | 197.52 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 911 | 197.52 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 986 | 197.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |