Os05g0395600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0395600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.51 | 0.449 | 2.87 | 0.197 | 0.209 | 8.24 | 0.0133 | 16.7 | 0.0374 | 7.87 | 1016 | 1578 | -- | -- |
| 97.74 | 0.46 | 2.8 | 0.0732 | 0.226 | -0.0103 | 0.135 | -- | 0.0323 | 8.15 | 1016 | 10578 | -- | -- |
| 91.17 | 0.445 | 2.88 | 0.208 | 0.217 | 10.3 | -- | 20.9 | 0.0416 | 8.07 | 1016 | 1522 | -- | -- |
| 97.51 | 0.46 | 2.8 | 0.106 | 0.232 | 0.108 | -- | -- | 0.0528 | 8.25 | 1012 | 4897 | -- | -- |
| 93.53 | 0.45 | 2.88 | 0.217 | -- | 10.4 | -- | 21.1 | 0.0491 | -- | 1016 | 1531 | -- | -- |
| 97.73 | 0.463 | 2.81 | 0.0752 | 0.232 | -- | 0.127 | -- | 0.0287 | 8.04 | -- | -- | -- | -- |
| 97.77 | 0.463 | 2.81 | 0.0791 | 0.231 | -- | -- | -- | 0.0288 | 8.17 | -- | -- | -- | -- |
| 100.3 | 0.466 | 2.81 | 0.119 | -- | 0.134 | -- | -- | 0.0484 | -- | 1014 | 5065 | -- | -- |
| 97.57 | 0.46 | 2.81 | -- | 0.237 | 0.125 | -- | -- | 0.0356 | 8.11 | 1014 | 4799 | -- | -- |
| 100.72 | 0.469 | 2.81 | 0.0809 | -- | -- | -- | -- | 0.0315 | -- | -- | -- | -- | -- |
| 97.94 | 0.463 | 2.81 | -- | 0.232 | -- | -- | -- | 0.02 | 8.14 | -- | -- | -- | -- |
| 100.58 | 0.467 | 2.81 | -- | -- | 0.116 | -- | -- | 0.0361 | -- | 1014 | 4840 | -- | -- |
| 100.89 | 0.469 | 2.81 | -- | -- | -- | -- | -- | 0.0225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.79 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 2 |
| 4 | 89.89 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 5 | 90.14 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 10 | 90.65 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 2 |
| 12 | 90.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 3 |
| 16 | 90.76 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 17 | 90.77 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 18 | 90.77 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 1 | 3 |
| 26 | 90.82 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 29 | 90.84 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 2 |
| 33 | 90.85 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 48 | 90.85 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 77 | 90.96 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 79 | 90.97 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 88 | 90.99 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 105 | 91.08 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 124 | 91.14 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 134 | 91.20 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 135 | 91.22 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 160 | 91.30 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 190 | 91.47 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 2 | NA |
| 199 | 91.53 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 225 | 91.54 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 328 | 91.65 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 4 |
| 409 | 92.10 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 1 |
| 444 | 92.40 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 3 | NA |
| 481 | 92.51 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 1 | 2 |
| 497 | 92.53 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 508 | 92.54 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 575 | 92.58 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 587 | 92.65 | radiation | 30 | 30 | < th | dose independent | rect. | 9 | 1 |
| 595 | 92.68 | wind | 3 | 10 | > th | dose dependent | rect. | 9 | 2 |
| 603 | 92.72 | wind | 5 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 605 | 92.73 | wind | 5 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 608 | 92.75 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 3 | NA |
| 631 | 92.93 | wind | 3 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 634 | 92.94 | wind | 5 | 10 | > th | dose independent | rect. | 9 | 2 |
| 642 | 92.97 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 647 | 92.98 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 649 | 92.98 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 668 | 93.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 675 | 93.01 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 679 | 93.01 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 693 | 93.02 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 694 | 93.02 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 739 | 93.08 | wind | 3 | 90 | > th | dose independent | rect. | 8 | 1 |
| 745 | 93.10 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 4 |
| 779 | 93.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 4 |
| 781 | 93.19 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 1 |
| 807 | 93.26 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 1 | 3 |
| 833 | 93.31 | wind | 3 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 838 | 93.35 | wind | 7 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 876 | 93.48 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 907 | 93.53 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 12 |
| 910 | 93.54 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 22 |
| 926 | 93.57 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 936 | 93.61 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 960 | 93.66 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 8 |
| 961 | 93.66 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 23 |
| 966 | 93.67 | wind | 5 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 993 | 93.71 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 11 |
| 999 | 93.73 | wind | 3 | 10 | < th | dose independent | rect. | 2 | 1 |