Os05g0395400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0395400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.87 | 0.401 | 9.49 | -0.648 | 0.421 | 1.26 | -0.0108 | 0.648 | -0.0751 | 23.1 | 19.6 | 1746 | -- | -- |
| 73.4 | 0.399 | 9.47 | -0.542 | 0.455 | 1.04 | -0.0845 | -- | -0.0435 | 23.1 | 19.6 | 2022 | -- | -- |
| 72.87 | 0.398 | 9.49 | -0.647 | 0.421 | 1.26 | -- | 0.648 | -0.075 | 23.1 | 19.59 | 1744 | -- | -- |
| 73.43 | 0.399 | 9.47 | -0.528 | 0.46 | 1.06 | -- | -- | -0.0465 | 23.2 | 19.57 | 2025 | -- | -- |
| 83.78 | 0.426 | 9.47 | -0.628 | -- | 1.25 | -- | 0.552 | -0.0703 | -- | 19.52 | 1678 | -- | -- |
| 94.38 | 0.455 | 9.52 | -1.01 | 0.411 | -- | -0.13 | -- | -0.268 | 23.1 | -- | -- | -- | -- |
| 94.44 | 0.455 | 9.52 | -1.01 | 0.411 | -- | -- | -- | -0.267 | 23.2 | -- | -- | -- | -- |
| 84.2 | 0.427 | 9.46 | -0.561 | -- | 1.12 | -- | -- | -0.0531 | -- | 19.66 | 1678 | -- | -- |
| 77.46 | 0.41 | 9.43 | -- | 0.467 | 1.32 | -- | -- | 0.0789 | 23.5 | 19.6 | 2670 | -- | -- |
| 105.02 | 0.479 | 9.51 | -0.999 | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
| 121.29 | 0.515 | 9.49 | -- | 0.402 | -- | -- | -- | -0.155 | 23.1 | -- | -- | -- | -- |
| 88.86 | 0.439 | 9.43 | -- | -- | 1.3 | -- | -- | 0.0809 | -- | 19.78 | 3028 | -- | -- |
| 131.36 | 0.535 | 9.48 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 3 | 70.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 22 | 70.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 26 | 70.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 36 | 71.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 39 | 71.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 65 | 71.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 67 | 71.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 73 | 71.39 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 74 | 71.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 79 | 71.43 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 136 | 71.84 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 142 | 71.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 153 | 71.94 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 166 | 71.99 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 226 | 72.41 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 232 | 72.44 | wind | 3 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 237 | 72.49 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 245 | 72.52 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 251 | 72.55 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 252 | 72.55 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 257 | 72.56 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 263 | 72.60 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 299 | 72.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 316 | 72.78 | wind | 3 | 43200 | < th | dose dependent | sin | 12 | NA |
| 328 | 72.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 343 | 72.85 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 21 |
| 366 | 72.96 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 377 | 72.99 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 389 | 73.02 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 22 |
| 408 | 73.08 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 431 | 73.15 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 449 | 73.19 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 494 | 73.28 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 502 | 73.30 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 548 | 73.39 | wind | 3 | 43200 | < th | dose dependent | no | NA | NA |
| 563 | 73.43 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 604 | 73.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 642 | 73.58 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 653 | 73.60 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 697 | 73.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 774 | 73.81 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 851 | 73.92 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 898 | 74.00 | wind | 1 | 43200 | > th | dose independent | sin | 6 | NA |
| 914 | 74.02 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 915 | 74.02 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 923 | 74.03 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 22 |
| 938 | 74.06 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 22 |