Os05g0393100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os05g0393100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.32 | 0.275 | 11.2 | -0.219 | 0.318 | 0.599 | 0.31 | 0.251 | 0.182 | 0.974 | 88.78 | 292 | -- | -- |
| 34.38 | 0.273 | 11.2 | -0.214 | 0.303 | 0.6 | 0.36 | -- | 0.19 | 0.928 | 88.85 | 251 | -- | -- |
| 34.36 | 0.273 | 11.2 | -0.225 | 0.298 | 0.523 | -- | 0.439 | 0.188 | 1.47 | 87.68 | 199 | -- | -- |
| 34.62 | 0.274 | 11.2 | -0.211 | 0.285 | 0.573 | -- | -- | 0.186 | 1.72 | 88.75 | 194 | -- | -- |
| 37.53 | 0.285 | 11.2 | -0.244 | -- | 0.655 | -- | 0.514 | 0.205 | -- | 86.55 | 156 | -- | -- |
| 41.21 | 0.301 | 11.3 | -0.137 | 0.534 | -- | 0.466 | -- | 0.0893 | 2.99 | -- | -- | -- | -- |
| 41.92 | 0.303 | 11.3 | -0.148 | 0.539 | -- | -- | -- | 0.0864 | 3.13 | -- | -- | -- | -- |
| 38.14 | 0.288 | 11.2 | -0.223 | -- | 0.712 | -- | -- | 0.215 | -- | 87.81 | 171 | -- | -- |
| 35.79 | 0.279 | 11.2 | -- | 0.293 | 0.548 | -- | -- | 0.205 | 1.82 | 88.81 | 197 | -- | -- |
| 58.45 | 0.357 | 11.3 | -0.125 | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
| 42.49 | 0.305 | 11.3 | -- | 0.536 | -- | -- | -- | 0.103 | 3.13 | -- | -- | -- | -- |
| 39.44 | 0.293 | 11.2 | -- | -- | 0.677 | -- | -- | 0.234 | -- | 87.6 | 152 | -- | -- |
| 58.86 | 0.358 | 11.3 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.91 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 2 | 33.96 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 21 |
| 3 | 33.97 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 4 | 34.02 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 7 | 34.07 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 19 | 34.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 22 | 34.30 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 25 | 34.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 28 | 34.35 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 23 |
| 35 | 34.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 38 | 34.46 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 41 | 34.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 42 | 34.46 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 49 | 34.49 | humidity | 90.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 51 | 34.49 | humidity | 90.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 53 | 34.49 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 55 | 34.50 | humidity | 90.0 | 270 | > th | dose independent | rect. | 13 | 22 |
| 65 | 34.54 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 66 | 34.54 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 94 | 34.59 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 99 | 34.60 | humidity | 90.0 | 270 | > th | dose independent | rect. | 7 | 23 |
| 105 | 34.61 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 108 | 34.61 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 122 | 34.62 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 132 | 34.63 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 135 | 34.64 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 136 | 34.64 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 138 | 34.64 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 139 | 34.64 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 173 | 34.67 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 176 | 34.68 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 186 | 34.69 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 189 | 34.70 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 195 | 34.72 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 198 | 34.73 | humidity | 90.0 | 270 | < th | dose independent | no | NA | NA |
| 211 | 34.75 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 216 | 34.77 | humidity | 90.0 | 270 | < th | dose independent | sin | 6 | NA |
| 220 | 34.77 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 221 | 34.78 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 247 | 34.81 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 249 | 34.81 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 282 | 34.86 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 17 |
| 283 | 34.86 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 288 | 34.86 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 290 | 34.87 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 291 | 34.87 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 296 | 34.88 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 305 | 34.88 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 312 | 34.89 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 340 | 34.93 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 368 | 34.95 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 389 | 34.98 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 402 | 34.99 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 413 | 35.00 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 420 | 35.01 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 431 | 35.02 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 462 | 35.03 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 521 | 35.06 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 553 | 35.08 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 616 | 35.10 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 627 | 35.10 | radiation | 1.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 660 | 35.11 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 683 | 35.12 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 23 |
| 684 | 35.12 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 685 | 35.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 758 | 35.15 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 762 | 35.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 830 | 35.17 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 22 |
| 859 | 35.18 | wind | 1.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 890 | 35.19 | radiation | 1.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 947 | 35.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 950 | 35.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 964 | 35.22 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 20 |
| 969 | 35.22 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 3 | 21 |
| 987 | 35.22 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 999 | 35.23 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 20 |