Os05g0392300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CDC2+/CDC28-related protein kinase R2 (EC 2.7.1.-).
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Os05g0392300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CDC2+/CDC28-related protein kinase R2 (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.23 | 0.183 | 10.9 | 0.27 | 0.03 | 0.287 | 0.0595 | 0.459 | 0.0254 | 3.22 | 61 | 4686 | -- | -- |
| 15.49 | 0.183 | 10.9 | 0.267 | 0.0176 | 0.281 | 0.105 | -- | 0.0254 | 2.83 | 62.01 | 4704 | -- | -- |
| 15.24 | 0.182 | 10.9 | 0.269 | 0.0329 | 0.284 | -- | 0.465 | 0.0257 | 4.37 | 61.04 | 4685 | -- | -- |
| 15.47 | 0.183 | 10.9 | 0.248 | 0.0188 | 0.309 | -- | -- | 0.0153 | 4.65 | 63 | 4682 | -- | -- |
| 15.3 | 0.182 | 10.9 | 0.268 | -- | 0.29 | -- | 0.454 | 0.0254 | -- | 61.01 | 4686 | -- | -- |
| 17.12 | 0.194 | 10.9 | 0.255 | 0.0464 | -- | 0.0122 | -- | 0.0717 | 4.36 | -- | -- | -- | -- |
| 17.12 | 0.194 | 10.9 | 0.255 | 0.0466 | -- | -- | -- | 0.0717 | 4.44 | -- | -- | -- | -- |
| 15.51 | 0.183 | 10.9 | 0.246 | -- | 0.314 | -- | -- | 0.0124 | -- | 63 | 4684 | -- | -- |
| 17.06 | 0.192 | 10.9 | -- | 0.0263 | 0.326 | -- | -- | -0.0197 | 3.95 | 63.43 | 4726 | -- | -- |
| 17.24 | 0.194 | 10.9 | 0.257 | -- | -- | -- | -- | 0.0729 | -- | -- | -- | -- | -- |
| 18.83 | 0.203 | 10.9 | -- | 0.0514 | -- | -- | -- | 0.0433 | 4.32 | -- | -- | -- | -- |
| 17.1 | 0.193 | 10.9 | -- | -- | 0.329 | -- | -- | -0.0189 | -- | 63.24 | 4726 | -- | -- |
| 18.98 | 0.203 | 10.9 | -- | -- | -- | -- | -- | 0.0444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 12 |
| 2 | 14.10 | temperature | 20.0 | 90 | > th | dose independent | rect. | 18 | 10 |
| 10 | 14.21 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 13 | 14.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 15 | 14.24 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 19 | 14.27 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 13 |
| 31 | 14.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 36 | 14.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 50 | 14.42 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 51 | 14.43 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 64 | 14.48 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 68 | 14.49 | temperature | 25.0 | 270 | < th | dose independent | sin | 12 | NA |
| 72 | 14.50 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 95 | 14.61 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 107 | 14.65 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 122 | 14.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 151 | 14.76 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 6 |
| 153 | 14.76 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 162 | 14.77 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 203 | 14.83 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 205 | 14.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 239 | 14.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 245 | 14.91 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 257 | 14.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 273 | 14.96 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 285 | 14.97 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 290 | 14.98 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 15 |
| 292 | 14.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 314 | 15.00 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 331 | 15.03 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 367 | 15.07 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 369 | 15.08 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 12 |
| 389 | 15.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 402 | 15.10 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 410 | 15.11 | temperature | 15.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 435 | 15.13 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 445 | 15.13 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 457 | 15.14 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 473 | 15.16 | wind | 5.0 | 90 | < th | dose independent | rect. | 18 | 9 |
| 483 | 15.16 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 492 | 15.17 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 21 |
| 496 | 15.17 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 517 | 15.18 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 545 | 15.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 549 | 15.20 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 20 |
| 556 | 15.20 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 14 |
| 558 | 15.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 563 | 15.21 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 575 | 15.21 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 586 | 15.22 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 589 | 15.22 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 600 | 15.22 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 604 | 15.22 | radiation | 1.0 | 30 | < th | dose dependent | sin | 13 | NA |
| 609 | 15.22 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 615 | 15.23 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 617 | 15.23 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 618 | 15.23 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 619 | 15.23 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 620 | 15.23 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 3 |
| 631 | 15.23 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 637 | 15.23 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 9 |
| 652 | 15.24 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 7 |
| 659 | 15.25 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 672 | 15.25 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 21 |
| 719 | 15.27 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 723 | 15.28 | radiation | 1.0 | 30 | < th | dose independent | sin | 13 | NA |
| 724 | 15.28 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 742 | 15.29 | radiation | 1.0 | 30 | > th | dose independent | sin | 13 | NA |
| 812 | 15.31 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 17 |
| 827 | 15.32 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 833 | 15.32 | temperature | 15.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 838 | 15.32 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 840 | 15.32 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 849 | 15.32 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 856 | 15.33 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 910 | 15.35 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 974 | 15.37 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 979 | 15.37 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 988 | 15.37 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 991 | 15.37 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 994 | 15.37 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 996 | 15.37 | wind | 7.0 | 30 | < th | dose dependent | rect. | 18 | 9 |