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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0391600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF563 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.72 (0.0442) R2 : 0.0599
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.501 (0.093) R2dN8 : 0.0773 R2N8 : 0.0599
σ : 0.832
deviance : 317.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
285.59 0.794 3.7 -0.587 0.444 0.836 -0.322 0.829 -0.509 4.94 30 109 -- --
285.73 0.787 3.71 -0.645 0.455 0.934 -0.265 -- -0.507 4.87 30 108 -- --
285.84 0.787 3.7 -0.574 0.447 0.833 -- 1.02 -0.506 4.9 30.03 108 -- --
286.01 0.788 3.71 -0.659 0.452 0.946 -- -- -0.511 4.88 30.01 108 -- --
294.35 0.799 3.71 -0.517 -- 0.622 -- 1.06 -0.496 -- 30.33 90 -- --
306.73 0.821 3.73 -0.527 0.168 -- -0.915 -- -0.567 5.43 -- -- -- --
308.8 0.823 3.73 -0.53 0.162 -- -- -- -0.563 5.51 -- -- -- --
294.75 0.8 3.72 -0.608 -- 0.746 -- -- -0.498 -- 30.31 90 -- --
297.25 0.803 3.7 -- 0.407 0.852 -- -- -0.444 4.85 30 108 -- --
310.17 0.823 3.73 -0.524 -- -- -- -- -0.559 -- -- -- -- --
316.19 0.832 3.71 -- 0.154 -- -- -- -0.504 5.66 -- -- -- --
304.37 0.813 3.7 -- -- 0.687 -- -- -0.436 -- 30.3 90 -- --
317.42 0.832 3.72 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 271.40 temperature 30.0 90 < th dose independent rect. 9 19
3 272.51 temperature 30.0 90 < th dose independent rect. 9 7
6 273.71 temperature 30.0 270 < th dose independent rect. 9 3
7 273.72 temperature 30.0 270 < th dose independent rect. 22 14
68 280.29 temperature 30.0 270 < th dose independent rect. 19 18
77 280.54 temperature 30.0 10 > th dose dependent rect. 17 20
95 281.44 temperature 30.0 90 > th dose dependent sin 9 NA
119 282.24 temperature 30.0 90 < th dose independent rect. 18 22
144 283.09 temperature 30.0 90 > th dose independent rect. 16 21
212 284.62 atmosphere 1000.0 270 > th dose independent rect. 8 4
213 284.65 temperature 30.0 90 > th dose independent rect. 13 23
215 284.73 atmosphere 995.0 270 > th dose independent rect. 13 19
217 284.85 temperature 25.0 720 > th dose dependent rect. 1 8
220 284.89 atmosphere 1000.0 270 > th dose independent rect. 9 2
242 285.36 wind 1.0 270 > th dose independent rect. 12 10
255 285.55 temperature 10.0 270 > th dose independent rect. 8 5
257 285.55 atmosphere 1015.0 270 < th dose independent rect. 8 5
258 285.55 radiation 40.0 30 < th dose independent rect. 13 9
259 285.55 temperature 10.0 270 > th dose independent rect. 13 19
261 285.57 precipitation 0.1 270 < th dose independent rect. 8 5
262 285.57 precipitation 0.1 270 < th dose dependent rect. 8 5
267 285.63 wind 7.0 270 < th dose independent rect. 3 14
273 285.70 wind 9.0 270 < th dose independent rect. 13 19
275 285.71 humidity 50.0 90 > th dose independent rect. 9 18
280 285.77 temperature 25.0 720 > th dose dependent rect. 5 4
294 285.92 temperature 30.0 90 < th dose independent rect. 22 23
300 285.99 temperature 30.0 90 > th dose independent no NA NA
301 285.99 temperature 30.0 90 > th dose independent rect. 8 11
397 286.05 atmosphere 995.0 90 > th dose independent rect. 13 9
399 286.07 humidity 50.0 270 > th dose independent rect. 7 20
404 286.11 temperature 30.0 720 < th dose independent rect. 1 10
407 286.15 precipitation 0.1 270 < th dose independent rect. 22 14
409 286.15 precipitation 0.1 270 < th dose dependent rect. 22 14
432 286.29 precipitation 0.1 270 < th dose independent rect. 13 19
433 286.29 precipitation 0.1 270 < th dose dependent rect. 13 19
443 286.42 wind 9.0 270 < th dose independent rect. 8 5
446 286.45 atmosphere 1000.0 30 > th dose independent rect. 22 15
453 286.50 temperature 10.0 270 > th dose independent rect. 12 10
454 286.50 temperature 10.0 270 > th dose independent rect. 22 14
455 286.50 atmosphere 995.0 270 > th dose independent rect. 22 14
458 286.53 precipitation 0.1 90 < th dose independent rect. 3 6
461 286.53 precipitation 0.1 90 < th dose dependent rect. 3 6
462 286.54 radiation 10.0 270 < th dose dependent rect. 17 10
463 286.55 precipitation 0.1 270 < th dose independent rect. 18 9
464 286.55 precipitation 0.1 270 < th dose dependent rect. 18 9
467 286.57 temperature 10.0 270 > th dose independent rect. 9 3
469 286.57 atmosphere 1015.0 270 < th dose independent rect. 9 3
470 286.57 temperature 10.0 270 > th dose independent rect. 12 21
471 286.58 temperature 10.0 270 > th dose dependent rect. 3 15
474 286.60 precipitation 0.1 270 < th dose independent rect. 9 3
478 286.60 humidity 50.0 270 > th dose independent rect. 8 5
483 286.60 precipitation 0.1 270 < th dose dependent rect. 9 3
486 286.64 humidity 50.0 270 > th dose independent rect. 17 10
487 286.64 precipitation 0.1 270 < th dose independent rect. 12 10
488 286.64 atmosphere 995.0 270 > th dose independent rect. 3 14
490 286.64 precipitation 0.1 270 < th dose dependent rect. 12 10
494 286.67 temperature 30.0 90 > th dose independent sin 0 NA
495 286.67 temperature 30.0 90 > th dose independent rect. 18 23
505 286.71 temperature 30.0 90 < th dose independent no NA NA
510 286.74 temperature 15.0 4320 > th dose independent rect. 12 3
511 286.74 temperature 15.0 4320 > th dose independent rect. 10 5
517 286.77 atmosphere 995.0 90 > th dose dependent rect. 9 5
520 286.81 humidity 60.0 90 > th dose independent rect. 3 6
521 286.82 atmosphere 995.0 270 > th dose dependent rect. 9 2
523 286.84 temperature 30.0 10 > th dose dependent rect. 9 4
539 286.87 temperature 30.0 90 > th dose dependent rect. 8 4
555 286.90 humidity 50.0 14400 < th dose dependent rect. 16 1
556 286.91 wind 9.0 90 < th dose independent rect. 3 6
557 286.91 temperature 10.0 90 > th dose independent rect. 3 6
560 286.91 atmosphere 995.0 90 > th dose independent rect. 3 6
561 286.91 atmosphere 1015.0 90 < th dose independent rect. 3 6
564 286.91 temperature 10.0 90 > th dose independent rect. 9 18
581 286.94 radiation 10.0 270 < th dose independent rect. 17 10
588 286.97 radiation 1.0 270 > th dose independent rect. 8 5
598 287.05 wind 1.0 270 > th dose independent rect. 13 18
621 287.15 wind 9.0 270 < th dose independent rect. 12 10
637 287.28 radiation 1.0 270 > th dose independent rect. 9 3
638 287.28 radiation 30.0 270 < th dose independent rect. 1 7
641 287.30 temperature 15.0 270 > th dose independent rect. 3 14
660 287.32 wind 1.0 270 > th dose independent rect. 8 5
672 287.35 precipitation 0.1 270 < th dose independent rect. 3 15
674 287.35 precipitation 0.1 270 < th dose dependent rect. 3 15
675 287.36 wind 1.0 270 > th dose independent rect. 9 3
683 287.40 temperature 30.0 90 < th dose independent rect. 1 13
685 287.41 radiation 40.0 90 < th dose independent rect. 3 6
702 287.42 humidity 50.0 270 > th dose independent rect. 6 22
703 287.43 humidity 50.0 14400 < th dose independent rect. 15 2
718 287.54 temperature 30.0 270 < th dose independent rect. 17 10
724 287.56 wind 9.0 90 < th dose independent rect. 9 18
726 287.57 temperature 10.0 270 > th dose independent rect. 1 7
728 287.57 temperature 30.0 270 < th dose independent rect. 1 7
729 287.57 humidity 50.0 270 > th dose independent rect. 1 7
731 287.57 atmosphere 995.0 270 > th dose independent rect. 1 7
732 287.57 atmosphere 1015.0 270 < th dose independent rect. 1 7
733 287.57 temperature 10.0 1440 > th dose independent rect. 14 9
736 287.57 temperature 10.0 1440 > th dose independent rect. 23 15
739 287.57 atmosphere 995.0 1440 > th dose independent rect. 23 15
741 287.58 wind 9.0 270 < th dose independent rect. 1 7
742 287.58 precipitation 0.1 270 < th dose independent rect. 1 7
744 287.58 precipitation 0.1 270 < th dose dependent rect. 1 7
754 287.62 temperature 30.0 270 > th dose independent sin 10 NA
755 287.62 temperature 30.0 270 < th dose independent sin 1 NA
759 287.64 temperature 30.0 90 > th dose independent rect. 9 4
761 287.64 precipitation 0.1 270 < th dose independent rect. 8 17
762 287.64 precipitation 0.1 270 < th dose dependent rect. 8 17
765 287.65 atmosphere 1010.0 90 < th dose independent rect. 13 9
774 287.72 wind 9.0 270 < th dose independent rect. 22 14
826 287.88 humidity 50.0 270 > th dose independent rect. 22 14
852 287.93 temperature 10.0 90 > th dose dependent rect. 13 9
873 287.94 temperature 10.0 90 > th dose dependent rect. 3 6
874 287.95 temperature 30.0 90 > th dose dependent rect. 10 1
880 287.96 humidity 50.0 30 > th dose independent rect. 22 15
881 287.97 atmosphere 995.0 270 > th dose independent rect. 18 9
886 288.00 wind 9.0 270 < th dose independent rect. 17 10
895 288.05 wind 9.0 30 < th dose independent rect. 13 9
910 288.11 temperature 10.0 270 > th dose independent rect. 17 10
916 288.11 atmosphere 1015.0 270 < th dose independent rect. 3 14
927 288.13 temperature 10.0 10 > th dose dependent rect. 14 8
946 288.16 radiation 1.0 270 < th dose independent rect. 7 20
948 288.17 humidity 70.0 270 > th dose independent rect. 3 4
954 288.18 temperature 30.0 270 < th dose independent sin 10 NA
963 288.21 radiation 20.0 270 < th dose independent rect. 3 4
964 288.21 precipitation 0.1 270 < th dose independent rect. 3 4
979 288.21 precipitation 0.1 270 < th dose dependent rect. 3 4
980 288.22 radiation 30.0 10 < th dose independent rect. 4 6
983 288.23 radiation 40.0 90 < th dose independent rect. 14 19
989 288.24 precipitation 0.1 270 < th dose independent rect. 7 20
990 288.24 temperature 10.0 270 > th dose dependent rect. 12 7
991 288.24 precipitation 0.1 270 < th dose dependent rect. 7 20
992 288.25 wind 9.0 270 < th dose independent rect. 3 4
993 288.25 temperature 10.0 270 > th dose independent rect. 3 4
995 288.25 temperature 30.0 270 < th dose independent rect. 3 4
996 288.25 humidity 50.0 270 > th dose independent rect. 3 4
998 288.25 atmosphere 995.0 270 > th dose independent rect. 3 4
999 288.25 atmosphere 1015.0 270 < th dose independent rect. 3 4