Os05g0391000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0391000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.71 | 0.59 | 7.49 | 0.811 | 0.43 | 1.84 | 0.758 | 0.493 | -0.264 | 7.84 | 22.2 | 1110 | -- | -- |
| 158.32 | 0.586 | 7.48 | 0.967 | 0.453 | 1.83 | 0.857 | -- | -0.239 | 7.93 | 22.24 | 1147 | -- | -- |
| 159.2 | 0.588 | 7.49 | 0.782 | 0.388 | 1.82 | -- | 0.598 | -0.277 | 7.76 | 22.21 | 1041 | -- | -- |
| 160.37 | 0.59 | 7.47 | 0.999 | 0.453 | 1.85 | -- | -- | -0.223 | 8.02 | 22.25 | 1147 | -- | -- |
| 165.91 | 0.6 | 7.51 | 0.774 | -- | 1.86 | -- | 0.664 | -0.282 | -- | 22.15 | 916 | -- | -- |
| 295.14 | 0.805 | 7.61 | 0.331 | 0.594 | -- | 0.676 | -- | -0.848 | 9.38 | -- | -- | -- | -- |
| 296.77 | 0.807 | 7.61 | 0.356 | 0.59 | -- | -- | -- | -0.847 | 9.53 | -- | -- | -- | -- |
| 167.23 | 0.602 | 7.49 | 0.978 | -- | 1.84 | -- | -- | -0.247 | -- | 22.1 | 900 | -- | -- |
| 183.3 | 0.631 | 7.51 | -- | 0.386 | 1.59 | -- | -- | -0.397 | 7.89 | 22.32 | 996 | -- | -- |
| 317.25 | 0.832 | 7.62 | 0.352 | -- | -- | -- | -- | -0.845 | -- | -- | -- | -- | -- |
| 300.11 | 0.81 | 7.62 | -- | 0.589 | -- | -- | -- | -0.887 | 9.48 | -- | -- | -- | -- |
| 189.66 | 0.641 | 7.52 | -- | -- | 1.63 | -- | -- | -0.392 | -- | 22.2 | 867 | -- | -- |
| 320.52 | 0.836 | 7.63 | -- | -- | -- | -- | -- | -0.884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 25 | 166.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 46 | 167.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 63 | 168.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 82 | 168.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 87 | 168.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 96 | 168.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 148 | 169.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 158 | 169.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 192 | 169.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 404 | 171.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 439 | 171.84 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 616 | 173.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 644 | 173.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 710 | 174.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |