Os05g0389900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0389900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.01 | 0.55 | 2.95 | 0.256 | 0.183 | 0.162 | -0.444 | 3.07 | 0.0763 | 8.07 | 27.42 | 10 | -- | -- |
| 138.4 | 0.548 | 2.97 | 0.0341 | 0.194 | 0.504 | -0.474 | -- | 0.0512 | 7.58 | 28.08 | 21 | -- | -- |
| 137.58 | 0.546 | 2.95 | 0.233 | 0.186 | 0.191 | -- | 3.13 | 0.0741 | 7.75 | 27.63 | 9 | -- | -- |
| 138.74 | 0.549 | 2.97 | 0.0245 | 0.204 | 0.495 | -- | -- | 0.0651 | 7.81 | 28.21 | 106 | -- | -- |
| 139.43 | 0.55 | 2.96 | 0.227 | -- | 0.168 | -- | 2.95 | 0.075 | -- | 27.66 | 9 | -- | -- |
| 141.59 | 0.558 | 2.98 | 0.0791 | 0.167 | -- | -0.365 | -- | 0.0347 | 8.98 | -- | -- | -- | -- |
| 141.94 | 0.558 | 2.98 | 0.0684 | 0.169 | -- | -- | -- | 0.0356 | 9.98 | -- | -- | -- | -- |
| 140.71 | 0.552 | 2.98 | 0.0356 | -- | 0.438 | -- | -- | 0.0426 | -- | 28 | 21 | -- | -- |
| 138.69 | 0.548 | 2.98 | -- | 0.22 | 0.499 | -- | -- | 0.0414 | 7.51 | 28 | 117 | -- | -- |
| 143.66 | 0.56 | 2.98 | 0.0663 | -- | -- | -- | -- | 0.0355 | -- | -- | -- | -- | -- |
| 142.06 | 0.558 | 2.98 | -- | 0.169 | -- | -- | -- | 0.028 | 9.95 | -- | -- | -- | -- |
| 140.72 | 0.552 | 2.98 | -- | -- | 0.462 | -- | -- | 0.0404 | -- | 28.1 | 21 | -- | -- |
| 143.78 | 0.56 | 2.98 | -- | -- | -- | -- | -- | 0.0281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.11 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 1 |
| 3 | 130.16 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 5 | 130.23 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 11 | 130.23 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 17 | 130.24 | temperature | 15 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 18 | 130.33 | temperature | 15 | 720 | < th | dose independent | rect. | 23 | 1 |
| 30 | 130.33 | temperature | 15 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 65 | 131.31 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 116 | 132.19 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 145 | 134.31 | radiation | 20 | 10 | < th | dose independent | rect. | 10 | 1 |
| 148 | 134.38 | wind | 3 | 270 | > th | dose independent | rect. | 6 | 1 |
| 194 | 134.97 | temperature | 30 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 203 | 135.47 | wind | 3 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 205 | 135.56 | radiation | 20 | 30 | < th | dose independent | rect. | 9 | 17 |
| 209 | 135.69 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 18 |
| 211 | 135.77 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 8 | 1 |
| 212 | 135.77 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 9 | 1 |
| 269 | 135.78 | radiation | 20 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 271 | 135.79 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 291 | 135.84 | temperature | 30 | 10 | > th | dose dependent | sin | 11 | NA |
| 294 | 135.87 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 298 | 135.91 | temperature | 30 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 316 | 136.06 | wind | 7 | 10 | > th | dose dependent | rect. | 4 | 7 |
| 322 | 136.09 | wind | 7 | 10 | > th | dose dependent | rect. | 9 | 2 |
| 327 | 136.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 335 | 136.12 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 360 | 136.20 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 367 | 136.20 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 375 | 136.27 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 379 | 136.27 | wind | 9 | 10 | > th | dose independent | rect. | 19 | 16 |
| 380 | 136.27 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 389 | 136.27 | wind | 9 | 10 | > th | dose dependent | rect. | 19 | 16 |
| 431 | 136.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 441 | 136.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 445 | 136.55 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 446 | 136.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 455 | 136.60 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 23 |
| 474 | 136.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 477 | 136.66 | temperature | 15 | 720 | < th | dose dependent | sin | 17 | NA |
| 506 | 136.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 515 | 136.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 516 | 136.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 520 | 136.73 | radiation | 20 | 30 | > th | dose dependent | rect. | 12 | 22 |
| 521 | 136.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 12 |
| 527 | 136.74 | atmosphere | 995 | 90 | > th | dose independent | rect. | 3 | 23 |
| 534 | 136.75 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 535 | 136.75 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 536 | 136.76 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 542 | 136.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 545 | 136.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 549 | 136.76 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 551 | 136.76 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 552 | 136.76 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 553 | 136.77 | temperature | 25 | 14400 | > th | dose independent | sin | 6 | NA |
| 567 | 136.77 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 582 | 136.77 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 586 | 136.77 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 21 |
| 588 | 136.78 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 590 | 136.78 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 625 | 136.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 627 | 136.79 | radiation | 30 | 90 | > th | dose independent | sin | 13 | NA |
| 630 | 136.79 | wind | 7 | 10 | > th | dose independent | rect. | 4 | 7 |
| 652 | 136.79 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 22 |
| 686 | 136.80 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 709 | 136.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 720 | 136.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 792 | 136.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 800 | 136.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 803 | 136.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 810 | 136.81 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 815 | 136.82 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 816 | 136.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 855 | 136.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 880 | 136.83 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 885 | 136.83 | radiation | 1 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 888 | 136.83 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 923 | 136.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 935 | 136.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 937 | 136.84 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 5 |