Os05g0389300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to U6 snRNA-associated Sm-like protein LSm5.
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Os05g0389300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to U6 snRNA-associated Sm-like protein LSm5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.79 | 0.181 | 11.8 | 0.708 | 0.533 | 1.18 | -0.0379 | -0.0913 | 0.215 | 17.5 | 28.73 | 291 | -- | -- |
| 14.49 | 0.177 | 11.8 | 0.72 | 0.495 | 1.16 | 0.0289 | -- | 0.208 | 18.8 | 28.11 | 472 | -- | -- |
| 14.61 | 0.178 | 11.8 | 0.733 | 0.489 | 1.16 | -- | -0.127 | 0.227 | 18.1 | 28.07 | 360 | -- | -- |
| 14.48 | 0.177 | 11.8 | 0.7 | 0.486 | 1.16 | -- | -- | 0.21 | 18.8 | 28.01 | 472 | -- | -- |
| 17.34 | 0.194 | 11.8 | 0.766 | -- | 1.1 | -- | -0.17 | 0.214 | -- | 27.8 | 1372 | -- | -- |
| 33.81 | 0.273 | 11.8 | 0.389 | 0.214 | -- | -0.0132 | -- | -0.0408 | 18.9 | -- | -- | -- | -- |
| 33.81 | 0.272 | 11.8 | 0.389 | 0.214 | -- | -- | -- | -0.0409 | 18.9 | -- | -- | -- | -- |
| 17.36 | 0.194 | 11.8 | 0.743 | -- | 1.14 | -- | -- | 0.216 | -- | 27.5 | 1378 | -- | -- |
| 25.78 | 0.236 | 11.8 | -- | 0.419 | 0.881 | -- | -- | 0.0817 | 18.3 | 28.12 | 406 | -- | -- |
| 36.21 | 0.281 | 11.8 | 0.384 | -- | -- | -- | -- | -0.0449 | -- | -- | -- | -- | -- |
| 37.8 | 0.288 | 11.9 | -- | 0.209 | -- | -- | -- | -0.0842 | 19 | -- | -- | -- | -- |
| 29.48 | 0.253 | 11.8 | -- | -- | 0.773 | -- | -- | 0.0614 | -- | 28.1 | 1341 | -- | -- |
| 40.11 | 0.296 | 11.8 | -- | -- | -- | -- | -- | -0.0876 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 3 | 14.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 17 | 14.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 44 | 15.08 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 53 | 15.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 62 | 15.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 82 | 15.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 112 | 15.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 117 | 15.42 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 118 | 15.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 121 | 15.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 177 | 15.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 187 | 15.54 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 197 | 15.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 229 | 15.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 234 | 15.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 256 | 15.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 10 |
| 297 | 15.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 455 | 15.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 479 | 15.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 505 | 15.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 527 | 15.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 692 | 15.79 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 776 | 15.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |