Os05g0388500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L1.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0388500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 50S ribosomal protein L1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.82 | 0.3 | 14.4 | -0.0832 | 0.963 | 0.561 | -0.249 | -0.322 | -0.234 | 22.5 | 25.7 | 10 | -- | -- |
| 40.85 | 0.3 | 14.4 | -0.0487 | 0.961 | 0.54 | -0.226 | -- | -0.225 | 22.5 | 25.7 | 9 | -- | -- |
| 41.05 | 0.301 | 14.4 | -0.0528 | 0.964 | 0.556 | -- | -0.125 | -0.228 | 22.5 | 25.7 | 9 | -- | -- |
| 41.05 | 0.3 | 14.4 | -0.0404 | 0.963 | 0.545 | -- | -- | -0.225 | 22.5 | 25.7 | 9 | -- | -- |
| 81.93 | 0.422 | 14.4 | -0.202 | -- | 0.684 | -- | -0.697 | -0.29 | -- | 24.3 | 664 | -- | -- |
| 45.1 | 0.315 | 14.4 | 0.0268 | 0.899 | -- | -0.253 | -- | -0.198 | 21.7 | -- | -- | -- | -- |
| 45.34 | 0.315 | 14.4 | 0.0366 | 0.9 | -- | -- | -- | -0.198 | 21.7 | -- | -- | -- | -- |
| 81.96 | 0.422 | 14.4 | -0.0933 | -- | 0.64 | -- | -- | -0.27 | -- | 24.3 | 664 | -- | -- |
| 41.1 | 0.3 | 14.4 | -- | 0.961 | 0.535 | -- | -- | -0.22 | 22.5 | 25.7 | 9 | -- | -- |
| 93.52 | 0.452 | 14.4 | 0.045 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 45.38 | 0.315 | 14.4 | -- | 0.9 | -- | -- | -- | -0.202 | 21.7 | -- | -- | -- | -- |
| 82.15 | 0.422 | 14.4 | -- | -- | 0.622 | -- | -- | -0.249 | -- | 24.4 | 662 | -- | -- |
| 93.58 | 0.452 | 14.4 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.57 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 3 | 39.06 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 4 | 39.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 14 | 39.76 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 15 | 39.80 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 17 | 39.83 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 9 |
| 20 | 39.84 | temperature | 25.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 22 | 39.85 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 23 | 39.87 | temperature | 25.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 24 | 39.87 | humidity | 80.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 26 | 39.88 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 28 | 39.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 32 | 39.88 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 35 | 39.88 | radiation | 20.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 36 | 39.88 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 39 | 39.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 42 | 39.88 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 43 | 39.88 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 44 | 39.88 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 46 | 39.89 | wind | 5.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 48 | 39.90 | humidity | 60.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 55 | 39.90 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 58 | 39.90 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 62 | 39.91 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 63 | 39.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 65 | 39.91 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 69 | 39.92 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 70 | 39.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 74 | 39.92 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 76 | 39.92 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 78 | 39.92 | radiation | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 79 | 39.92 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 81 | 39.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 85 | 39.92 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 88 | 39.93 | radiation | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 89 | 39.94 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 103 | 39.98 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 105 | 39.98 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 111 | 40.00 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 112 | 40.01 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 23 |
| 114 | 40.01 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 139 | 40.09 | wind | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 143 | 40.10 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 148 | 40.12 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 11 | 12 |
| 150 | 40.13 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 11 | 12 |
| 168 | 40.22 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 176 | 40.30 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 177 | 40.30 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 180 | 40.32 | temperature | 25.0 | 270 | > th | dose independent | sin | 4 | NA |
| 191 | 40.39 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 198 | 40.43 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 10 |
| 205 | 40.46 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 219 | 40.51 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 227 | 40.53 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 229 | 40.54 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 233 | 40.56 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 12 |
| 242 | 40.58 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 244 | 40.60 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 6 |
| 250 | 40.61 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 261 | 40.64 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 13 |
| 266 | 40.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 274 | 40.67 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 11 |
| 297 | 40.70 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 8 |
| 305 | 40.71 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 306 | 40.72 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 342 | 40.78 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 354 | 40.80 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 395 | 40.88 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 409 | 40.90 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 466 | 40.96 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 486 | 40.99 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 520 | 41.04 | humidity | 50.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 532 | 41.05 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 12 |
| 571 | 41.08 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 604 | 41.10 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 622 | 41.13 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 736 | 41.21 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 867 | 41.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 880 | 41.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 970 | 41.39 | wind | 1.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 987 | 41.40 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 21 |