Os05g0387600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0387600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.32 | 0.513 | 5.02 | 1.58 | 0.499 | 1.5 | 0.355 | -1.72 | -0.466 | 11.8 | 24.7 | 748 | -- | -- |
| 122.56 | 0.516 | 5.06 | 1.28 | 0.533 | 1.69 | 0.0459 | -- | -0.536 | 12.1 | 24.03 | 685 | -- | -- |
| 119.68 | 0.51 | 5.02 | 1.56 | 0.504 | 1.53 | -- | -1.51 | -0.464 | 12.1 | 24.7 | 716 | -- | -- |
| 122.5 | 0.515 | 5.05 | 1.3 | 0.521 | 1.72 | -- | -- | -0.54 | 12.2 | 24 | 680 | -- | -- |
| 132.33 | 0.536 | 5.01 | 1.67 | -- | 1.78 | -- | -1.67 | -0.381 | -- | 26.07 | 844 | -- | -- |
| 164.38 | 0.601 | 5.12 | 0.828 | 0.694 | -- | -0.0248 | -- | -0.862 | 11.6 | -- | -- | -- | -- |
| 164.38 | 0.6 | 5.12 | 0.827 | 0.694 | -- | -- | -- | -0.862 | 11.5 | -- | -- | -- | -- |
| 135.71 | 0.543 | 5.04 | 1.35 | -- | 1.91 | -- | -- | -0.453 | -- | 25.64 | 829 | -- | -- |
| 160.88 | 0.591 | 5.11 | -- | 0.602 | 1.16 | -- | -- | -0.782 | 12 | 24 | 544 | -- | -- |
| 194.68 | 0.652 | 5.14 | 0.808 | -- | -- | -- | -- | -0.87 | -- | -- | -- | -- | -- |
| 182.41 | 0.632 | 5.14 | -- | 0.685 | -- | -- | -- | -0.954 | 11.5 | -- | -- | -- | -- |
| 178.44 | 0.622 | 5.1 | -- | -- | 1.34 | -- | -- | -0.709 | -- | 25.63 | 779 | -- | -- |
| 211.9 | 0.679 | 5.16 | -- | -- | -- | -- | -- | -0.959 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.75 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 2 | 112.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 40 | 116.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 43 | 116.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 64 | 117.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 66 | 117.84 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 78 | 118.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 79 | 118.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 83 | 118.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 19 |
| 164 | 119.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 169 | 119.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 185 | 119.46 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 187 | 119.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 236 | 120.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |