Os05g0387200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UDP-sulfoquinovose synthase, chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SoSQD1).
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Os05g0387200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UDP-sulfoquinovose synthase, chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SoSQD1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.63 | 0.44 | 12.9 | 0.445 | 1.47 | -1.74 | 0.515 | 4.31 | -0.432 | 20.4 | 20.31 | 4239 | -- | -- |
| 106.81 | 0.481 | 12.9 | 0.205 | 1.53 | -1.96 | 0.527 | -- | -0.398 | 20.3 | 13.62 | 23721 | -- | -- |
| 88.44 | 0.438 | 12.9 | 0.462 | 1.47 | -1.74 | -- | 4.44 | -0.427 | 20.4 | 20.5 | 4236 | -- | -- |
| 106.83 | 0.481 | 12.9 | 0.316 | 1.5 | -2.08 | -- | -- | -0.322 | 20.2 | 11.91 | 23622 | -- | -- |
| 207.06 | 0.67 | 12.8 | 0.389 | -- | -1.7 | -- | 4.11 | -0.461 | -- | 20 | 4357 | -- | -- |
| 170.09 | 0.611 | 13.1 | -1.5 | 1.46 | -- | 0.417 | -- | -1.1 | 20.1 | -- | -- | -- | -- |
| 170.6 | 0.612 | 13.1 | -1.51 | 1.46 | -- | -- | -- | -1.1 | 20.1 | -- | -- | -- | -- |
| 226.44 | 0.701 | 12.9 | 0.32 | -- | -2.02 | -- | -- | -0.347 | -- | 11.93 | 24499 | -- | -- |
| 107.36 | 0.483 | 12.9 | -- | 1.46 | -1.96 | -- | -- | -0.368 | 20.2 | 11.61 | 21626 | -- | -- |
| 287.6 | 0.792 | 13.1 | -1.52 | -- | -- | -- | -- | -1.12 | -- | -- | -- | -- | -- |
| 230.41 | 0.71 | 13.1 | -- | 1.47 | -- | -- | -- | -0.932 | 20 | -- | -- | -- | -- |
| 226.25 | 0.701 | 12.9 | -- | -- | -1.95 | -- | -- | -0.403 | -- | 10.3 | 21624 | -- | -- |
| 348.5 | 0.871 | 13 | -- | -- | -- | -- | -- | -0.949 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 2 | 81.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 25 | 84.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 28 | 84.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 30 | 84.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 37 | 84.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 40 | 84.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 47 | 84.63 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 62 | 85.01 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 76 | 85.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 93 | 85.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 156 | 86.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 186 | 86.75 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 187 | 86.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 188 | 86.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 195 | 86.78 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 222 | 86.92 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 228 | 86.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 229 | 86.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 231 | 86.98 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 238 | 87.01 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 239 | 87.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 3 |
| 257 | 87.06 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 267 | 87.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 5 |
| 296 | 87.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 299 | 87.19 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 329 | 87.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 331 | 87.30 | temperature | 20 | 4320 | > th | dose independent | sin | 11 | NA |
| 335 | 87.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 357 | 87.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 369 | 87.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 370 | 87.41 | temperature | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 377 | 87.43 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 395 | 87.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 399 | 87.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 422 | 87.59 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 458 | 87.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 464 | 87.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 497 | 87.81 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 506 | 87.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 522 | 87.87 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 555 | 87.96 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 569 | 87.99 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 570 | 88.00 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 613 | 88.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 634 | 88.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 638 | 88.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 662 | 88.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 666 | 88.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 741 | 88.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 756 | 88.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 778 | 88.43 | temperature | 15 | 43200 | > th | dose independent | sin | 9 | NA |
| 798 | 88.46 | humidity | 90 | 43200 | > th | dose dependent | sin | 3 | NA |
| 854 | 88.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 886 | 88.65 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 894 | 88.66 | temperature | 25 | 4320 | > th | dose independent | sin | 2 | NA |
| 915 | 88.71 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 926 | 88.73 | radiation | 1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 930 | 88.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 3 |