Os05g0386700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0386700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.29	(0.044)	R²	:	0.391
β₁	:	-2.25	(0.16)	R²_dD	:	0.274	R²_D	:	0.201
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.22	(0.129)	R²_dE	:	0.129	R²_E	:	0.116
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.397	(0.0961)	R²_dN8	:	0.0323	R²_N8	:	0.0221
σ	:	0.817
deviance	:	307.81
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	73.76
memory length	:	746
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	18
open length of G	:	14.3

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
300.75	0.815	4.26	-2.14	0.337	1.07	-0.108	2.31	-0.432	9.88	70.47	718	18	14.4
297.79	0.804	4.28	-2.29	0.457	1.23	-0.286	--	-0.396	10.3	74	728	17.9	14.3
300.78	0.808	4.26	-2.14	0.338	1.07	--	2.33	-0.432	9.76	70.52	718	18	14.4
297.95	0.804	4.28	-2.24	0.426	1.25	--	--	-0.397	10.7	73.71	727	17.8	14.3
307.47	0.817	4.27	-2.14	--	1.02	--	2.63	-0.441	--	69.73	722	18	14.6
355.06	0.883	4.33	-2.2	0.416	--	1.3	--	-0.62	5.51	--	--	--	--
358.56	0.887	4.33	-2.19	0.439	--	--	--	-0.624	6.42	--	--	--	--
307.81	0.817	4.29	-2.25	--	1.22	--	--	-0.397	--	73.76	746	18	14.3
377.15	0.904	4.39	--	0.411	1.62	--	--	-0.564	10.1	69.38	30925	16.9	14.7
368.59	0.897	4.34	-2.18	--	--	--	--	-0.615	--	--	--	--	--
485.1	1.03	4.27	--	0.411	--	--	--	-0.38	6.72	--	--	--	--
354.41	0.877	4.36	--	--	2.71	--	--	-0.479	--	69.98	30005	17	14
493.93	1.04	4.28	--	--	--	--	--	-0.373	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	301.20	humidity	80	720	< th	dose dependent	rect.	18	4
5	302.38	humidity	70	720	< th	dose independent	rect.	18	14
7	303.04	humidity	80	720	< th	dose dependent	rect.	18	14
11	304.26	humidity	70	720	< th	dose independent	rect.	18	2
25	304.99	temperature	30	720	> th	dose dependent	rect.	18	1
43	305.57	humidity	70	720	> th	dose independent	rect.	18	8
92	309.96	humidity	70	720	> th	dose independent	rect.	17	16
108	310.25	temperature	30	720	> th	dose independent	rect.	18	1
146	310.93	radiation	20	4320	> th	dose dependent	rect.	6	2
162	311.04	humidity	70	1440	> th	dose independent	rect.	18	14
177	311.07	radiation	30	4320	> th	dose independent	rect.	16	16
185	311.33	radiation	30	4320	> th	dose independent	rect.	7	1
201	311.38	radiation	30	4320	< th	dose independent	rect.	23	9
209	311.48	radiation	30	4320	< th	dose independent	rect.	6	2
222	311.64	radiation	30	4320	< th	dose independent	rect.	19	13
237	311.88	radiation	30	4320	< th	dose independent	rect.	17	15
241	311.95	humidity	80	1440	< th	dose dependent	sin	12	NA
258	312.23	radiation	30	4320	< th	dose independent	rect.	2	6
298	313.19	humidity	70	1440	> th	dose independent	rect.	18	3
309	313.28	wind	1	90	< th	dose independent	rect.	4	1
310	313.29	wind	1	90	< th	dose dependent	rect.	4	1
397	314.98	humidity	70	1440	< th	dose independent	sin	12	NA
408	315.11	humidity	50	1440	< th	dose independent	rect.	16	1
439	315.47	humidity	50	1440	< th	dose dependent	rect.	16	1
441	315.51	humidity	70	720	> th	dose independent	sin	12	NA
461	315.71	humidity	50	1440	> th	dose independent	rect.	16	1
476	315.76	temperature	30	720	< th	dose independent	rect.	17	9
491	316.19	humidity	50	720	> th	dose dependent	rect.	17	8
533	316.55	wind	1	14400	> th	dose independent	rect.	1	1
725	318.09	radiation	1	720	> th	dose independent	rect.	18	1
757	318.30	humidity	60	1440	> th	dose independent	rect.	14	13
758	318.30	atmosphere	995	43200	> th	dose independent	rect.	16	21
865	318.79	atmosphere	995	43200	< th	dose independent	rect.	16	20
872	318.83	humidity	70	1440	> th	dose independent	rect.	17	20
892	318.99	radiation	20	1440	< th	dose dependent	rect.	11	1
951	319.13	atmosphere	995	43200	< th	dose dependent	rect.	13	13
966	319.17	humidity	80	1440	< th	dose independent	rect.	7	1
989	319.26	atmosphere	995	43200	< th	dose independent	rect.	16	23