Os05g0384300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os05g0384300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 823.55 | 1.35 | 5.86 | -6.56 | 0.693 | 4.88 | 0.337 | -9.47 | -1.12 | 22 | 20.5 | 706 | 8.03 | -- |
| 988.62 | 1.46 | 5.73 | -6.17 | 0.105 | 6.23 | -2.71 | -- | -0.761 | 0.938 | 20.6 | 966 | 11.1 | -- |
| 823.78 | 1.34 | 5.86 | -6.54 | 0.6 | 4.93 | -- | -9.28 | -1.1 | 21.9 | 20.56 | 704 | 8.13 | -- |
| 1015.31 | 1.48 | 5.63 | -5.44 | 1.06 | 6.26 | -- | -- | -0.835 | 9.09 | 21 | 902 | 11.6 | -- |
| 827.83 | 1.34 | 5.82 | -6.43 | -- | 5.09 | -- | -8.97 | -1.07 | -- | 20.53 | 703 | 8.68 | -- |
| 1472.79 | 1.8 | 5.48 | -4.04 | 3.53 | -- | -4.56 | -- | 0.0344 | 2.78 | -- | -- | -- | -- |
| 1544.55 | 1.84 | 5.46 | -3.93 | 3.51 | -- | -- | -- | 0.0617 | 2.74 | -- | -- | -- | -- |
| 1025.51 | 1.49 | 5.68 | -5.44 | -- | 6.37 | -- | -- | -0.867 | -- | 20.92 | 982 | 11.4 | -- |
| 1677.99 | 1.91 | 5.43 | -- | 1.61 | 4.68 | -- | -- | -0.021 | 7.57 | 21.2 | 725 | 11 | -- |
| 2260.75 | 2.22 | 5.45 | -3.78 | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
| 1951.82 | 2.07 | 5.37 | -- | 3.43 | -- | -- | -- | 0.5 | 2.73 | -- | -- | -- | -- |
| 1707.5 | 1.92 | 5.46 | -- | -- | 4.74 | -- | -- | -0.171 | -- | 21.2 | 774 | 9.96 | -- |
| 2637.91 | 2.4 | 5.35 | -- | -- | -- | -- | -- | 0.571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 831.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 2 | 835.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 3 | 835.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 9 | 842.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 27 | 861.69 | temperature | 20 | 720 | > th | dose independent | sin | 14 | NA |
| 33 | 863.93 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 16 |
| 38 | 866.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 51 | 868.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 57 | 869.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 59 | 869.60 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 61 | 870.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 77 | 871.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 132 | 876.48 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 213 | 881.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 232 | 883.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 259 | 884.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 266 | 884.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 304 | 887.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 305 | 887.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 311 | 887.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 384 | 890.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 508 | 894.81 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 510 | 894.87 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 604 | 899.66 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 639 | 902.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 645 | 902.70 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 650 | 902.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 670 | 904.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 708 | 907.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 716 | 908.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 814 | 916.01 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 836 | 917.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 860 | 919.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 883 | 921.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 938 | 924.86 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 941 | 925.30 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 959 | 926.56 | radiation | 20 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 964 | 927.08 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 982 | 928.04 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 990 | 928.48 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |