Os05g0382400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0382400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.03 | 0.762 | 6.53 | 3.73 | 1.45 | -1.26 | -0.0221 | -0.639 | 0.419 | 18.8 | 33.25 | 1224 | -- | -- |
| 262.94 | 0.755 | 6.52 | 3.82 | 1.45 | -1.32 | -0.0711 | -- | 0.425 | 18.8 | 33.29 | 1198 | -- | -- |
| 262.9 | 0.755 | 6.53 | 3.73 | 1.45 | -1.26 | -- | -0.646 | 0.42 | 18.8 | 33.27 | 1198 | -- | -- |
| 262.92 | 0.755 | 6.52 | 3.83 | 1.45 | -1.33 | -- | -- | 0.421 | 18.8 | 33.27 | 1198 | -- | -- |
| 371.48 | 0.898 | 6.53 | 3.43 | -- | -1.08 | -- | -2.46 | 0.392 | -- | 33.2 | 1251 | -- | -- |
| 349.02 | 0.876 | 6.47 | 3.51 | 1.49 | -- | 0.42 | -- | 0.656 | 18.2 | -- | -- | -- | -- |
| 349.41 | 0.875 | 6.47 | 3.51 | 1.49 | -- | -- | -- | 0.658 | 18.3 | -- | -- | -- | -- |
| 372.13 | 0.898 | 6.5 | 3.81 | -- | -1.37 | -- | -- | 0.379 | -- | 33.2 | 1251 | -- | -- |
| 636.27 | 1.17 | 6.58 | -- | 1.4 | -0.82 | -- | -- | 0.138 | 18.6 | 33.9 | 1181 | -- | -- |
| 465.36 | 1.01 | 6.44 | 3.47 | -- | -- | -- | -- | 0.625 | -- | -- | -- | -- | -- |
| 673.45 | 1.21 | 6.55 | -- | 1.45 | -- | -- | -- | 0.267 | 18.4 | -- | -- | -- | -- |
| 740.28 | 1.27 | 6.56 | -- | -- | -0.894 | -- | -- | 0.0689 | -- | 33.89 | 1200 | -- | -- |
| 782.23 | 1.31 | 6.53 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.13 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 16 | 268.53 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 147 | 272.18 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 164 | 272.39 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 277 | 273.35 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 378 | 276.34 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 379 | 276.37 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 496 | 277.93 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 511 | 278.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 542 | 278.32 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 621 | 278.67 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 628 | 278.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 645 | 278.79 | humidity | 60 | 1440 | < th | dose dependent | sin | 12 | NA |
| 649 | 278.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 652 | 278.84 | humidity | 60 | 1440 | < th | dose independent | sin | 13 | NA |
| 677 | 278.87 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 681 | 278.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 747 | 279.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 752 | 279.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 771 | 279.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 778 | 279.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 782 | 279.29 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 806 | 279.35 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 848 | 279.50 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 887 | 279.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 890 | 279.56 | humidity | 60 | 1440 | > th | dose independent | sin | 13 | NA |
| 900 | 279.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 902 | 279.68 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 911 | 279.73 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 912 | 279.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 965 | 279.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 996 | 280.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 1000 | 280.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 18 |