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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0382200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cation/H+ exchanger (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0415) R2 : 0.0119
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.205 (0.0875) R2dN8 : 0.0153 R2N8 : 0.0119
σ : 0.782
deviance : 280.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.93 0.731 3 0.128 0.0763 4.81 -0.827 -17.2 -0.155 0.551 89.15 89 2.95 2.98
259.39 0.75 3 0.0871 0.069 3.52 -0.883 -- -0.191 0.64 91 77 2.72 2.05
244.75 0.729 3 0.16 0.0796 4.79 -- -17.2 -0.149 23.7 89 86 2.93 2.97
260.61 0.752 3 0.154 0.126 2.47 -- -- -0.128 19.3 89.44 298 2.85 0.433
245.01 0.729 2.99 0.161 -- 4.62 -- -16.5 -0.153 -- 89.1 80 2.97 2.95
273.75 0.776 3 0.12 0.142 -- -1.23 -- -0.198 2.51 -- -- -- --
279.13 0.782 2.99 0.152 0.139 -- -- -- -0.191 2.54 -- -- -- --
260.49 0.752 2.99 0.172 -- 2.4 -- -- -0.148 -- 89.6 296 2.9 0.383
260.98 0.752 3 -- 0.0921 2.18 -- -- -0.177 20.3 89.71 294 2.85 0.597
280.26 0.782 2.99 0.158 -- -- -- -- -0.187 -- -- -- -- --
279.74 0.782 3 -- 0.142 -- -- -- -0.208 2.55 -- -- -- --
261.09 0.753 2.99 -- -- 2.23 -- -- -0.164 -- 90 296 2.9 0.383
280.92 0.782 3 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.50 humidity 90.0 90 < th dose dependent rect. 3 3
3 244.35 humidity 90.0 270 < th dose dependent rect. 3 1
4 244.46 humidity 80.0 270 < th dose independent rect. 24 5
6 244.61 humidity 80.0 270 < th dose dependent rect. 24 5
7 244.66 humidity 80.0 270 < th dose independent rect. 2 3
30 246.74 humidity 90.0 30 < th dose independent rect. 3 1
37 247.46 temperature 20.0 10 < th dose dependent rect. 3 1
39 247.53 temperature 20.0 10 < th dose dependent rect. 3 6
66 249.33 wind 7.0 1440 > th dose independent rect. 2 1
69 249.33 wind 7.0 1440 > th dose dependent rect. 3 1
100 250.92 wind 1.0 10 < th dose dependent rect. 24 2
118 251.73 wind 1.0 10 < th dose dependent rect. 14 12
119 251.74 wind 1.0 10 < th dose dependent rect. 21 5
133 252.32 atmosphere 1000.0 30 < th dose dependent rect. 23 1
173 253.37 temperature 20.0 10 < th dose dependent rect. 2 19
185 253.98 temperature 20.0 10 < th dose dependent rect. 2 15
196 254.29 wind 1.0 10 < th dose independent rect. 24 2
205 254.61 wind 1.0 10 < th dose independent rect. 14 12
209 254.63 wind 1.0 10 < th dose independent rect. 21 5
223 254.89 wind 1.0 10 < th dose dependent rect. 14 8
224 254.90 wind 1.0 10 < th dose independent rect. 21 1
228 254.90 wind 1.0 10 < th dose dependent rect. 21 1
277 255.64 wind 1.0 10 < th dose independent rect. 15 7
288 255.96 temperature 20.0 90 < th dose independent rect. 2 3
294 256.08 temperature 20.0 10 < th dose independent rect. 3 6
317 256.33 temperature 25.0 30 > th dose dependent rect. 23 2
324 256.41 temperature 20.0 90 < th dose independent rect. 3 1
337 256.67 radiation 1.0 1440 < th dose dependent rect. 6 1
363 257.13 wind 1.0 10 < th dose independent rect. 11 11
384 257.51 wind 1.0 10 < th dose dependent rect. 11 11
428 258.14 temperature 20.0 270 < th dose independent rect. 24 4
451 258.41 wind 3.0 90 < th dose dependent rect. 10 12
461 258.58 atmosphere 1005.0 10 > th dose dependent rect. 3 1
481 258.86 temperature 20.0 10 < th dose dependent sin 2 NA
499 259.06 humidity 80.0 720 < th dose dependent rect. 21 1
500 259.07 radiation 1.0 1440 < th dose dependent rect. 1 6
501 259.07 radiation 1.0 1440 < th dose dependent rect. 22 9
539 259.22 atmosphere 1005.0 720 < th dose independent rect. 18 1
549 259.27 humidity 80.0 1440 > th dose independent rect. 3 1
569 259.38 atmosphere 1000.0 10 < th dose independent rect. 23 1
601 259.55 temperature 20.0 30 < th dose independent rect. 3 17
605 259.58 wind 1.0 14400 > th dose independent rect. 4 1
614 259.64 wind 9.0 720 > th dose dependent rect. 18 1
623 259.68 temperature 20.0 30 > th dose dependent rect. 2 21
629 259.72 atmosphere 1005.0 720 < th dose independent rect. 17 3
638 259.76 humidity 80.0 1440 > th dose independent rect. 24 3
645 259.79 temperature 20.0 10 < th dose independent rect. 3 13
698 259.99 wind 3.0 43200 < th dose independent rect. 9 1
704 260.02 wind 3.0 43200 > th dose independent rect. 9 1
707 260.04 wind 1.0 14400 < th dose independent rect. 4 1
708 260.04 wind 3.0 720 < th dose dependent rect. 11 1
725 260.11 wind 1.0 270 < th dose dependent rect. 21 2
747 260.28 wind 3.0 14400 < th dose dependent rect. 21 1
793 260.56 temperature 30.0 720 < th dose dependent rect. 10 1
810 260.85 radiation 1.0 1440 < th dose independent rect. 6 1
821 260.97 radiation 1.0 1440 > th dose independent rect. 6 1
825 260.99 wind 1.0 14400 > th dose independent rect. 21 1
826 261.00 radiation 1.0 14400 < th dose dependent rect. 6 1
831 261.02 temperature 30.0 720 < th dose dependent rect. 7 5
837 261.09 atmosphere 1005.0 720 > th dose independent rect. 18 1
841 261.13 wind 9.0 720 > th dose independent rect. 18 1
842 261.14 wind 1.0 14400 < th dose dependent rect. 3 2
847 261.16 humidity 80.0 90 > th dose dependent rect. 22 12
854 261.22 atmosphere 1005.0 720 > th dose independent rect. 17 3
861 261.27 wind 3.0 43200 < th dose dependent rect. 19 1
867 261.33 radiation 1.0 14400 > th dose independent rect. 6 1
882 261.38 radiation 1.0 14400 < th dose independent rect. 6 1
892 261.44 humidity 80.0 270 > th dose dependent rect. 21 10
895 261.46 wind 1.0 14400 > th dose independent rect. 19 11
897 261.47 wind 3.0 43200 < th dose independent rect. 19 1
900 261.48 wind 5.0 43200 < th dose dependent rect. 9 1
913 261.56 wind 1.0 14400 < th dose independent rect. 19 11
915 261.57 wind 7.0 14400 < th dose independent rect. 10 1
924 261.59 wind 1.0 10 < th dose dependent sin 17 NA
926 261.60 wind 1.0 14400 < th dose independent rect. 21 1
934 261.66 precipitation 0.1 14400 < th dose independent rect. 6 1
937 261.66 precipitation 0.1 14400 < th dose dependent rect. 6 1
943 261.68 wind 7.0 14400 > th dose independent rect. 5 4
965 261.76 temperature 10.0 10 > th dose dependent rect. 1 23
968 261.78 wind 1.0 90 < th dose independent rect. 11 11