Os05g0381900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF594 family protein.
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Os05g0381900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF594 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273.64 | 0.777 | 2.86 | 0.0832 | 0.0929 | 0.924 | -0.526 | -2.54 | 0.281 | 12.1 | 1015 | 1623 | -- | -- |
| 273.92 | 0.771 | 2.86 | 0.11 | 0.0666 | 2.06 | -0.58 | -- | 0.296 | 12.2 | 1016 | 1668 | -- | -- |
| 274.8 | 0.772 | 2.86 | 0.0712 | 0.0949 | 0.961 | -- | -2.59 | 0.279 | 12.9 | 1015 | 1635 | -- | -- |
| 275.15 | 0.773 | 2.87 | 0.0755 | 0.0863 | 2.18 | -- | -- | 0.278 | 13.1 | 1016 | 1651 | -- | -- |
| 275.36 | 0.773 | 2.86 | 0.0675 | -- | 0.951 | -- | -2.7 | 0.28 | -- | 1015 | 1638 | -- | -- |
| 287.84 | 0.795 | 2.88 | -0.0476 | 0.125 | -- | -0.757 | -- | 0.237 | 12.1 | -- | -- | -- | -- |
| 290.3 | 0.798 | 2.88 | -0.077 | 0.13 | -- | -- | -- | 0.234 | 12.6 | -- | -- | -- | -- |
| 275.61 | 0.773 | 2.87 | 0.0686 | -- | 2.2 | -- | -- | 0.277 | -- | 1016 | 1723 | -- | -- |
| 275.3 | 0.773 | 2.87 | -- | 0.0842 | 2.14 | -- | -- | 0.27 | 13 | 1016 | 1650 | -- | -- |
| 291.35 | 0.798 | 2.88 | -0.0816 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 290.45 | 0.797 | 2.88 | -- | 0.131 | -- | -- | -- | 0.242 | 12.7 | -- | -- | -- | -- |
| 275.73 | 0.773 | 2.87 | -- | -- | 2.16 | -- | -- | 0.269 | -- | 1016 | 1723 | -- | -- |
| 291.53 | 0.797 | 2.88 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.35 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 3 |
| 2 | 263.35 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 3 |
| 3 | 263.58 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 11 | 4 |
| 7 | 265.30 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 10 | 265.43 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 17 | 265.68 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 26 | 266.26 | humidity | 80.0 | 90 | > th | dose independent | rect. | 11 | 4 |
| 67 | 268.58 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 74 | 268.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 1 |
| 75 | 268.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 1 |
| 203 | 271.46 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 10 | 17 |
| 215 | 271.53 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 219 | 271.61 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 305 | 272.20 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 312 | 272.25 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 387 | 272.68 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 388 | 272.68 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 403 | 272.75 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 471 | 273.02 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 477 | 273.08 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 9 |
| 491 | 273.15 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 528 | 273.26 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 23 | 16 |
| 582 | 273.51 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 591 | 273.52 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 687 | 273.78 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 4 |
| 704 | 273.85 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 9 |
| 724 | 273.90 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 732 | 273.90 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 749 | 273.90 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 757 | 273.90 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 775 | 273.91 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 9 | 7 |
| 794 | 273.93 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 8 |
| 834 | 274.01 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 22 | 21 |
| 838 | 274.03 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 852 | 274.06 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 894 | 274.10 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 897 | 274.11 | atmosphere | 1015.0 | 1440 | > th | dose independent | no | NA | NA |
| 923 | 274.11 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 932 | 274.12 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 953 | 274.14 | atmosphere | 1015.0 | 1440 | < th | dose independent | no | NA | NA |
| 955 | 274.14 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 956 | 274.14 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 21 |