Os05g0381500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0381500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.16 | 0.258 | 12.6 | -0.817 | 0.875 | -0.964 | 0.391 | -1.83 | -0.206 | 0.733 | 27.89 | 237 | -- | -- |
| 34.1 | 0.272 | 12.7 | -1.13 | 0.936 | -1.07 | 0.114 | -- | -0.238 | 0.599 | 50.36 | 109 | -- | -- |
| 30.7 | 0.258 | 12.6 | -0.817 | 0.866 | -0.948 | -- | -1.72 | -0.203 | 0.77 | 27.85 | 267 | -- | -- |
| 34.09 | 0.272 | 12.7 | -1.14 | 0.919 | -0.971 | -- | -- | -0.242 | 0.59 | 32.14 | 142 | -- | -- |
| 52.37 | 0.337 | 12.6 | -0.928 | -- | -1.22 | -- | -1.6 | -0.197 | -- | 36.32 | 875 | -- | -- |
| 45.22 | 0.315 | 12.6 | -0.916 | 0.733 | -- | 0.0538 | -- | -0.0899 | 23.6 | -- | -- | -- | -- |
| 45.24 | 0.315 | 12.6 | -0.919 | 0.733 | -- | -- | -- | -0.0901 | 23.6 | -- | -- | -- | -- |
| 54.51 | 0.344 | 12.7 | -1.24 | -- | -1.24 | -- | -- | -0.279 | -- | 49.36 | 880 | -- | -- |
| 64.57 | 0.376 | 12.6 | -- | 0.838 | -0.523 | -- | -- | -0.0501 | 24 | 38.11 | 35 | -- | -- |
| 78.95 | 0.415 | 12.6 | -0.898 | -- | -- | -- | -- | -0.0818 | -- | -- | -- | -- | -- |
| 67.48 | 0.384 | 12.6 | -- | 0.722 | -- | -- | -- | 0.0122 | 23.5 | -- | -- | -- | -- |
| 90.29 | 0.443 | 12.6 | -- | -- | -0.747 | -- | -- | -0.0777 | -- | 46.08 | 846 | -- | -- |
| 100.24 | 0.467 | 12.6 | -- | -- | -- | -- | -- | 0.0179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 7 | 30.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 10 | 30.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 14 | 30.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 19 | 30.68 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 25 | 30.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 26 | 30.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 45 | 31.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 47 | 31.06 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 52 | 31.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 54 | 31.11 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 61 | 31.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 62 | 31.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 76 | 31.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 80 | 31.24 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 83 | 31.25 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 90 | 31.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 92 | 31.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 95 | 31.28 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 23 |
| 98 | 31.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 107 | 31.31 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 118 | 31.34 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 119 | 31.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 138 | 31.37 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 23 |
| 139 | 31.37 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 23 |
| 145 | 31.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 146 | 31.38 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 150 | 31.38 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 152 | 31.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 161 | 31.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 184 | 31.43 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 23 |
| 191 | 31.45 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 23 |
| 203 | 31.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 206 | 31.48 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 23 |
| 209 | 31.49 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 228 | 31.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 240 | 31.53 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 23 |
| 276 | 31.60 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 282 | 31.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 316 | 31.68 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 23 |
| 320 | 31.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 326 | 31.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 388 | 31.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 465 | 31.85 | temperature | 25 | 1440 | < th | dose independent | sin | 6 | NA |
| 471 | 31.85 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 491 | 31.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 585 | 31.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 595 | 31.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 603 | 31.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 646 | 32.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 665 | 32.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 687 | 32.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 749 | 32.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 790 | 32.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 791 | 32.14 | temperature | 25 | 1440 | > th | dose independent | sin | 6 | NA |
| 891 | 32.23 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 897 | 32.23 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 899 | 32.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 941 | 32.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 974 | 32.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 979 | 32.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 982 | 32.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 988 | 32.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 998 | 32.33 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 16 |