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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0380800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NB-ARC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0367) R2 : 0.0268
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.274 (0.0773) R2dN8 : 0.0346 R2N8 : 0.0268
σ : 0.692
deviance : 219.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.34 0.634 3.13 -0.384 0.174 3.39 -0.0821 12.7 0.209 8.74 1.008 11 0.988 2.02
192.5 0.651 3.13 -0.404 0.168 3.13 -0.196 -- 0.206 9.3 0.9628 9 0.904 2.69
182.32 0.629 3.13 -0.392 0.175 3.42 -- 12.9 0.212 8.57 0.9568 12 0.986 2.2
192.58 0.651 3.13 -0.412 0.173 3.11 -- -- 0.205 8.7 0.9659 8 0.901 2.77
183.14 0.63 3.14 -0.384 -- 3.37 -- 12.4 0.207 -- 0.8624 13 0.975 2.03
213.58 0.685 3.13 -0.4 0.187 -- 0.265 -- 0.227 6.04 -- -- -- --
213.67 0.685 3.13 -0.397 0.192 -- -- -- 0.227 6.79 -- -- -- --
194.27 0.652 3.14 -0.411 -- 3.09 -- -- 0.206 -- 0.9668 8 0.921 2.79
197.02 0.657 3.12 -- 0.172 3.08 -- -- 0.25 8.88 0.9704 8 1.02 2.74
215.6 0.686 3.13 -0.392 -- -- -- -- 0.231 -- -- -- -- --
217.81 0.69 3.12 -- 0.188 -- -- -- 0.271 6.92 -- -- -- --
198.6 0.659 3.13 -- -- 3.03 -- -- 0.248 -- 0.9901 4 1.02 2.71
219.66 0.692 3.12 -- -- -- -- -- 0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.66 wind 1.0 10 < th dose dependent rect. 1 2
10 189.33 wind 1.0 10 < th dose independent rect. 1 2
22 197.59 atmosphere 1005.0 10 > th dose dependent rect. 1 2
31 200.60 temperature 20.0 10 < th dose independent rect. 2 1
34 201.23 humidity 90.0 10 > th dose dependent rect. 24 3
55 202.41 atmosphere 1005.0 30 > th dose independent rect. 1 2
65 203.26 temperature 30.0 10 < th dose independent rect. 11 1
66 203.27 wind 3.0 10 < th dose dependent rect. 22 5
78 203.68 temperature 25.0 10 < th dose dependent rect. 2 1
80 203.81 humidity 90.0 10 > th dose independent rect. 24 3
84 203.89 wind 7.0 10 < th dose independent rect. 12 23
88 204.12 temperature 30.0 10 < th dose independent rect. 11 16
90 204.18 humidity 90.0 270 > th dose independent rect. 21 10
92 204.19 humidity 80.0 30 > th dose dependent rect. 16 11
93 204.20 atmosphere 1005.0 10 > th dose independent rect. 22 14
102 204.32 wind 9.0 90 < th dose dependent rect. 15 12
113 204.42 wind 9.0 10 < th dose dependent rect. 16 11
115 204.45 humidity 90.0 270 > th dose dependent rect. 12 19
120 204.49 humidity 90.0 270 > th dose independent rect. 12 19
125 204.52 humidity 90.0 270 > th dose dependent rect. 19 12
137 204.57 humidity 80.0 30 > th dose dependent rect. 14 13
150 204.67 wind 3.0 10 < th dose dependent rect. 11 16
161 204.75 radiation 10.0 30 > th dose independent rect. 11 1
168 204.76 wind 3.0 10 < th dose dependent rect. 9 18
185 204.85 humidity 90.0 270 > th dose independent sin 11 NA
198 204.92 temperature 30.0 30 < th dose independent rect. 22 14
204 204.95 wind 1.0 1440 < th dose dependent rect. 1 1
206 204.96 temperature 30.0 10 < th dose independent rect. 10 8
215 205.01 humidity 90.0 90 > th dose independent rect. 24 1
217 205.01 humidity 90.0 270 > th dose dependent sin 12 NA
225 205.03 atmosphere 1005.0 10 > th dose independent rect. 24 12
241 205.07 wind 7.0 10 < th dose dependent rect. 6 20
259 205.14 wind 5.0 30 > th dose independent rect. 11 1
262 205.15 atmosphere 995.0 30 > th dose dependent rect. 22 14
275 205.19 temperature 10.0 10 > th dose dependent rect. 3 22
276 205.20 atmosphere 1000.0 10 > th dose independent rect. 11 1
304 205.26 atmosphere 995.0 30 > th dose dependent rect. 1 11
319 205.30 wind 1.0 30 > th dose dependent rect. 11 1
322 205.31 temperature 30.0 720 < th dose independent rect. 24 9
331 205.34 atmosphere 995.0 10 > th dose dependent rect. 11 1
336 205.35 wind 9.0 30 < th dose dependent rect. 3 23
351 205.41 wind 1.0 1440 < th dose dependent rect. 15 11
358 205.43 atmosphere 1005.0 30 > th dose independent rect. 22 5
362 205.43 temperature 10.0 10 > th dose dependent rect. 3 19
364 205.44 wind 1.0 1440 < th dose dependent rect. 21 1
369 205.45 temperature 10.0 10 > th dose dependent rect. 12 23
371 205.47 temperature 30.0 10 < th dose dependent rect. 24 3
374 205.48 wind 7.0 10 < th dose independent rect. 12 10
413 205.55 wind 9.0 10 < th dose dependent rect. 12 14
418 205.57 precipitation 0.1 1440 < th dose independent rect. 12 1
419 205.57 precipitation 0.1 1440 < th dose dependent rect. 12 1
433 205.59 atmosphere 1005.0 90 > th dose dependent rect. 24 5
456 205.66 radiation 10.0 4320 < th dose dependent rect. 16 1
475 205.70 temperature 10.0 10 > th dose independent rect. 11 1
478 205.70 atmosphere 1015.0 10 < th dose independent rect. 11 1
479 205.70 precipitation 0.1 10 < th dose independent rect. 11 1
480 205.70 temperature 10.0 10 > th dose independent rect. 12 23
481 205.70 precipitation 0.1 10 < th dose dependent rect. 11 1
485 205.71 humidity 60.0 30 > th dose independent rect. 11 1
486 205.71 humidity 80.0 10 > th dose dependent rect. 22 5
494 205.72 radiation 30.0 720 < th dose independent rect. 15 2
496 205.72 wind 5.0 10 > th dose dependent rect. 12 1
506 205.74 temperature 10.0 1440 > th dose independent rect. 12 1
510 205.74 atmosphere 995.0 1440 > th dose independent rect. 12 1
511 205.74 temperature 10.0 1440 > th dose independent rect. 13 23
514 205.74 humidity 90.0 90 > th dose dependent rect. 21 5
529 205.78 wind 7.0 30 < th dose independent rect. 3 13
531 205.78 atmosphere 1015.0 30 < th dose independent rect. 12 23
532 205.78 temperature 25.0 90 > th dose dependent rect. 2 2
535 205.79 humidity 90.0 720 < th dose independent rect. 24 1
560 205.84 temperature 30.0 10 < th dose independent rect. 8 10
566 205.84 radiation 1.0 30 > th dose dependent rect. 12 23
569 205.85 atmosphere 995.0 30 > th dose dependent rect. 16 11
574 205.86 humidity 50.0 30 > th dose dependent rect. 12 14
601 205.91 humidity 50.0 270 > th dose dependent rect. 18 13
609 205.93 temperature 30.0 90 < th dose independent rect. 10 8
620 205.95 humidity 80.0 10 > th dose dependent rect. 9 18
621 205.96 wind 1.0 30 > th dose independent rect. 11 1
622 205.96 wind 9.0 10 < th dose independent rect. 11 1
631 205.97 atmosphere 995.0 30 > th dose dependent rect. 11 16
635 205.99 wind 3.0 30 < th dose independent rect. 16 11
653 206.02 wind 7.0 10 < th dose independent rect. 12 14
667 206.04 humidity 90.0 270 > th dose dependent rect. 3 1
677 206.05 atmosphere 995.0 30 > th dose independent rect. 12 23
681 206.05 temperature 10.0 30 > th dose dependent rect. 12 10
696 206.07 wind 3.0 90 < th dose independent rect. 9 18
704 206.08 wind 9.0 10 < th dose dependent rect. 5 23
709 206.10 precipitation 0.1 30 < th dose independent rect. 12 23
711 206.10 atmosphere 995.0 30 > th dose dependent rect. 22 5
714 206.10 precipitation 0.1 30 < th dose dependent rect. 12 23
715 206.11 humidity 90.0 270 > th dose independent rect. 3 1
720 206.12 humidity 90.0 90 > th dose independent rect. 15 11
728 206.13 precipitation 0.1 720 < th dose independent rect. 3 11
731 206.13 atmosphere 1000.0 270 > th dose dependent rect. 22 4
733 206.13 precipitation 0.1 720 < th dose dependent rect. 3 11
744 206.15 humidity 90.0 90 > th dose independent rect. 13 13
751 206.16 atmosphere 1015.0 10 < th dose dependent rect. 12 23
753 206.17 temperature 30.0 10 < th dose independent rect. 24 13
764 206.18 humidity 80.0 30 < th dose independent rect. 11 1
772 206.18 wind 7.0 90 < th dose dependent rect. 11 15
773 206.18 wind 7.0 90 < th dose dependent rect. 9 17
786 206.20 wind 1.0 10 > th dose independent rect. 12 23
797 206.21 humidity 90.0 270 < th dose independent rect. 22 11
805 206.23 precipitation 0.1 720 < th dose independent rect. 2 13
806 206.23 temperature 30.0 720 < th dose independent rect. 21 15
809 206.23 precipitation 0.1 720 < th dose dependent rect. 2 13
815 206.24 temperature 30.0 720 < th dose independent rect. 15 12
816 206.24 temperature 15.0 30 > th dose independent rect. 22 14
818 206.24 radiation 1.0 30 > th dose dependent rect. 11 1
833 206.26 radiation 1.0 4320 > th dose independent rect. 12 18
845 206.27 radiation 1.0 4320 < th dose independent rect. 12 18
848 206.27 wind 9.0 30 < th dose dependent rect. 3 13
857 206.28 radiation 20.0 720 < th dose independent rect. 17 7
858 206.28 humidity 90.0 10 > th dose independent rect. 17 10
862 206.28 radiation 1.0 4320 > th dose independent rect. 9 21
871 206.30 radiation 30.0 720 < th dose independent rect. 24 9
872 206.30 radiation 1.0 4320 < th dose independent rect. 9 21
911 206.34 humidity 90.0 270 < th dose independent rect. 14 13
924 206.35 radiation 1.0 4320 > th dose independent rect. 12 7
946 206.36 temperature 30.0 10 < th dose independent rect. 8 19
956 206.37 temperature 30.0 720 < th dose independent rect. 15 21
959 206.37 temperature 30.0 10 < th dose dependent rect. 11 16
973 206.39 radiation 1.0 4320 > th dose independent rect. 9 10
1000 206.40 wind 3.0 270 < th dose independent rect. 22 1